SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13781

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene13781
CGTCGTGACCTTGGCTGTCGTGAGCTTGGCTGTGACTCTACCTGTAGGAAAAACATTCCCACTGGGAGAAGCTGCAGAGGCTCATCATGCTAAAGACAGCAAACTTGCTAGTGGGAAAGTTATTCTTGAAATTGAATGACAGTTCTTGTAGTCATCTTTTATAGTTTTATCTGGTCCAACTTGGCAAGTTTTTTTTCCATATTGTTTTTCAATATTCTTGTGTATGTCTA

Ace file of the UniGene uagpf_v2_unigene13781

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2367	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc binding dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RX93_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	zinc binding	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH:quinone reductase.	EC:1.6.5.5	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	NADPH:quinone reductase activity	GO:0003960	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP99

Fln msg: your sequence is shorter than subject: 46 - 366

Fln protein: VVTLAVVSLAVTLPVGKTFPLGEAAEAHHAKDSKLASGKVILEIE*

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCGTGAGCTTGGCTGTGACTCTACCTGTAGGAAAAACATTCCCACTGGGAGAAGCTGCAGAGGCTCATCATGCTAAAGACAGCAAACTTGCTAGTGGGAAAGTTATTCTTGAAATTGAATGA___CAGTTCTTGTAGTCATCTTTTATAGTTTTATCTGGTCCAACTTGGCAAGTTTTTTTTCCATATTGTTTTTCAATATTCTTGTGTATGTCTA

Fln Alignment:

Contig13781___GKTFPLGEAAEAHHAKDSKLASGKVILEIE
B8LP99________________GKTFPLGEAAEAHHVKESKLASGKVVLEIE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
42	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain