SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13746

Length: 1939 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13746

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene173	45/51
SustainPine v2.0	sp_v2.0_unigene71167	2/51

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 5 [Arabidopsis thaliana] ref\|NP_001185415.1\| F-box/LRR-repeat protein 5 [Arabidopsis thaliana] sp\|O49286.1\|SKP2B_ARATH RecName: Full=F-box protein SKP2B; AltName: Full=F-box/LRR-repeat protein 5; Short=AtFB5; AltName: Full=SKP2-li	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	f-box protein fbl2	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVF7

Fln msg:

Fln protein: MILSPPSTLDAMDLEVTKQEGYFALQNHTSLTNMEKNENADGNEDSKWQDMPMELLMGILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKSNMSKLLLSIAPKFTRLQSLNLRQNQHQLDDQAVEMVAKHCHDLRALDLSNSTQLTDTSIDALARGCNQLEKLNISGCSKVTDSALIFLAAKCCRLRHLNLCGCCQAASDRALLALAQNCRGLQSLNLGWCERVTDVGVTGLAQGCPEMRAVDLCGCVLITDKSVVALAENCPRLRSLGLYYCQNITDYAMYSLVNSSIYGTGKENSKQKSSNIRYNTEPVSTQGSQRCRRSNGGRQSCGISERNAAASRDYMESVLSDEEGYGLVQLNISQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCAIEAQRERRSRAAASAFPAGILNARAIR*

Protein Length: 440

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCGAGCGCAATATTACTCGTCTTCTGCAGATCAGTTTTTTCATTCAGTCTTATCTCTGGTGTTAGTAATTCAGCCTTTTGTGTATAAAGTAAATTTATATATCAGCTACCTGGCTGTCCATATCCTAGAAAGAATACATTAAAACA_-_ATGATCCTTTCACCACCCTCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAAGGGTACTTTGCCTTGCAGAATCACACTAGTCTCACAAATATGGAGAAGAATGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATATGCCCATGGAGCTCCTTATGGGTATACTTAGGCTTGTTGATGATCGTACTGTAATTATTGGATCCGGTGTATGTACTGGCTGGAGGGAGGCAATCTGCATTGGTGTTCAGGAACTTTCTTTATCATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGCACTGTCATGATTTGCGTGCTCTAGACCTTTCCAACAGTACTCAGCTGACAGATACATCTATTGATGCTCTGGCGCGTGGTTGTAATCAACTTGAAAAACTTAATATTAGTGGATGTTCAAAGGTTACTGATTCAGCACTGATATTTCTGGCAGCGAAGTGCTGCAGATTGAGACATCTTAATCTTTGTGGTTGTTGTCAAGCTGCATCTGACAGGGCTTTGCTGGCTCTGGCACAAAATTGCCGCGGCTTGCAATCTTTGAATTTGGGTTGGTGTGAGAGGGTGACTGATGTGGGTGTGACAGGTTTGGCACAAGGTTGTCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCCTCGCTTAAGGTCATTGGGATTGTACTACTGCCAAAATATCACAGACTATGCTATGTACTCTTTAGTAAATAGCAGCATATACGGGACAGGGAAGGAAAACTCCAAACAGAAGAGCAGTAATATCAGATACAACACTGAGCCAGTATCCACCCAAGGCAGTCAAAGATGCAGGCGGAGTAATGGAGGTAGACAGAGTTGCGGCATCAGTGAACGCAATGCAGCTGCTAGTCGTGATTACATGGAATCTGTTTTGAGTGACGAAGAGGGGTATGGTCTAGTGCAGTTAAATATTAGCCAATGCACATTCTTATCTGCTCCTGCTGTTCAAGCTGTTTGTGATACTTTCCCAGCATTGCATACTTGTCCAGAGAAGCACTCCCTCATCATAAGTGGCTGCCTAAACCTTACCTCAGTGCATTGTGTGTGTGCAATTGAAGCTCAGAGAGAACGAAGAAGCAGAGCGGCAGCTTCTGCTTTTCCTGCAGGGATTCTAAATGCAAGAGCAATACGTTGA___ATTTAGCAAGCATTCCTAGATTGTATCTAGTTTGCAGGCTGCATGATATGGCTTGTATTGAATCTTAGTCTAGATTTCTTACGGATAAGTTATGGGATGTGAATATCAGGGAAAGTTATCGTAAGGTTAAGAAGAGTTATTTTGAGCATTTTTAGGAGTTGAAAAATATGTTACATTTTATCCATGGGTAGGAAAAAACATGTTACATTTTCTCCATGGTTTCAGTTTGTATACATGTTTCCCAGTTCTACTCTAATTACCTGGAGATGGGATATACTGTTATTTTGCCATGGTTTCAGTTTGTAAATATCTTCTGGTATTCTTCTCAGTTTCCTGGAGTTGGGTATACTCTTAATGACTAACATGGATTTCAATGTTTCGACTTTCAAGTGCCATCCTGCGCTAAAAACATTCGAATGCTGTCACAGTATGAACTAGGATCTATATTTG

Fln Alignment:

Contig13746___MILSPPSTLDAMDLEVTKQEGYFALQNHTSLTNMEKNENADGNEDSKWQDMPMELLMGILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKSNMSKLLLSIAPKFTRLQSLNLRQNQHQLDDQAVEMVAKHCHDLRALDLSNSTQLTDTSIDALARGCNQLEKLNISGCSKVTDSALIFLAAKCCRLRHLNLCGCCQAASDRALLALAQNCRGLQSLNLGWCERVTDVGVTGLAQGCPEMRAVDLCGCVLITDKSVVALAENCPRLRSLGLYYCQNITDYAMYSLVNSSIYGTGKENSKQKSSNIRYNTEPVSTQGSQRCRRSNGGRQSCGISERNAAASRDYMESVLSDEEGYGLVQLNISQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCXXXXXXXXXXXXXXXXFPAGILNARAIR
A9NVF7________________MILSPPSTLDAMDLEVTKQEWNFSLQNHTSVTNMEKNETADGNEDSKWKDLPMELLMRILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKLNMSKLLLSIAPKFARLQSLNLRQNQHQLDDQAVEMVAKYCHDLRALDLSNSTQLTDTSIDALARGCNHLEKLNISGCSKVTDSALIFLAAKCNRLRHLNLCGCCPAASDRALLALAQNCCGLQSLNLGWCDRVTDVGVTGLAQGCPEMRAVDLCSCVLITDKSVVALAENCPRLRSLGLYYCQNITDTAMYSLVNSSIYGAGKENSKHKSSNIRYNTEPVSIQGSQRCRRSNGGRQSCGISERIVAASRDYMETVLSDQEGYGLVQLNVSQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCAIEAQRERKSRAAASDYPAGILNARAIR

SNPs (tot: 100)

Position	A %	C %	G %	T %	Probability
126		28		71	1.0
127	71		28		1.0
132		71		28	1.0
133			28	71	1.0
173	81		18		0.999994
174	81			18	0.999994
175		18		81	0.999994
177	81			18	0.999994
178			18	81	0.999994
184			18	81	0.999994
185		81	18		0.999994
186	81	18			0.999994
187		81		18	0.999994
188		81	18		0.999994
189	81			18	0.999994
191	18	81			0.999994
312	88		11		0.923564
313	88			11	0.923564
314	88	11			0.923564
315	88		11		0.923564
318	11		88		0.923564
320	88			11	0.923564
323	88	11			0.923564
325	88		11		0.923564
327	11		88		0.923564
329		88		11	0.923564
388	11			88	0.923564
402		22		77	0.999999
404			77	22	0.999999
406			22	77	0.999999
407			75	25	1.0
410		25	75		1.0
411		25	75		1.0
412			75	25	1.0
413	75			25	1.0
417	75			25	1.0
418	75		25		1.0
422	25		75		1.0
424	75			25	1.0
425		28		71	1.0
426	28			71	1.0
430			71	28	1.0
450	87		12		0.992554
452		12	87		0.992554
458	87	12			0.992554
459		12	87		0.992554
461		87		12	0.992554
463	87		12		0.992554
464	87	12			0.992554
465		87		12	0.992554
466	87		12		0.992554
468		12	87		0.992554
470			87	12	0.992554
1196		33	66		0.997452
1197	33	66			0.997452
1267	20			80	0.995493
1350	88	11			0.923564
1355	88		11		0.923564
1356		88		11	0.923564
1357			11	88	0.923564
1358	11	88			0.923564
1362		87		12	0.992554
1363	88		11		0.923564
1364			11	88	0.923564
1366	88		11		0.923564
1368	88	11			0.923564
1370		11	88		0.923564
1373		11	88		0.923564
1374	11	88			0.923564
1384		87		12	0.992554
1431	72			27	1.0
1432	72	27			1.0
1434	72		27		1.0
1436		27	72		1.0
1438	72			27	1.0
1439			72	27	1.0
1440	72		27		1.0
1444			72	27	1.0
1450		30		70	1.0
1451	30	70			1.0
1503	88	11			0.923564
1506	88		11		0.923564
1508	11			88	0.923564
1512	88			11	0.923564
1514	88		11		0.923564
1515		11		88	0.923564
1519	88	11			0.923564
1520	11			88	0.923564
1523	88	11			0.923564
1524	11		88		0.923564
1698			10	90	0.90298
1701	90	10			0.90298
1704			10	90	0.90298
1705			10	90	0.90298
1710	90		10		0.90298
1712		10	90		0.90298
1713	10		90		0.90298
1714		10		90	0.90298
1716		10		90	0.90298
1717	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain