SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13741

Length: 522 nt

UniGene Fasta

>uagpf_v2_unigene13741
CGTCGTGACCTTGGCTGTCACTCAGTTTTGATCGGTATCATGAGTTGGGGCAGCAAGCTTTTGGTGAAAAACTTGGTTTATGGATTGTCGTTCCGCAGCAACTGATAGTTGAAATTGGTGTTGATATAGTCTACATGGTTACTGGGGGAACGTCTTGACGTTGTTTCATGAATTGTTTGCCCAAGTTGCAAAAATAAGGAAGTCTTACTTCATTGCTATTTTTGGTTCAGTTCATTTTGTCCTATCACAACTGCCTAATTTCAATTCAGTGGTTGGAATTTCGCTGGCTGCAGCGGTCATGTCTCTAAGCTACTCTACAATTGCTTGGACAGCCTCTGCTCATAAGGGACAACTGCCAGATGTGGATTACGGTATTAAAAGCTCATCAACTAAGGATACTGTTTTAATGTGTTCAATGCCCTGGGAAACGTTGCCTTTGCTTATGCAGGACACAATGTAGTCTTAGAGATCCAAGCTACTATTCCTTCCAAACCAGGGAAACCNTCCAAGGTCCCTATGTGG

Ace file of the UniGene uagpf_v2_unigene13741

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12908	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	histidine amino acid transporter [Oryza sativa Indica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	lysine histidine transporter 1	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	85%
Blast2go	amino acid import	GO:0043090	Biological Process	85%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%
Blast2go	response to karrikin	GO:0080167	Biological Process	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg: Separated hits, possible frame ERROR between 322 and 403, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 201 aas, your sequence is shorter than subject: 174 - 508

Fln protein: VVTLAVTQF*SVS*VGAASFW*KTWFMDCRSAATDS*NWC*YSLHGYWGNVLTLFHELFAQVAKIRKSYFIAIFGSVHFVLSQLPNFNSVVGISLAAAVMSLSYSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNVFNALGNVAFAYAGHNVVLEIQATIPSKPGKPSKVPMW

Protein Length: 175

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGATCGGTATCATGAGTTGGGGCAGCAAGCTTTTGGTGAAAAACTTGGTTTATGGATTGTCGTTCCGCAGCAACTGATAGTTGAAATTGGTGTTGATATAGTCTACATGGTTACTGGGGGAACGTCTTGACGTTGTTTCATGAATTGTTTGCCCAAGTTGCAAAAATAAGGAAGTCTTACTTCATTGCTATTTTTGGTTCAGTTCATTTTGTCCTATCACAACTGCCTAATTTCAATTCAGTGGTTGGAATTTCGCTGGCTGCAGCGGTCATGTCTCTAAGCTACTCTACAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTAATGTGTTCAATGCCCTGGGAAACGTTGCCTTTGCTTATGCAGGACACAATGTAGTCTTAGAGATCCAAGCTACTATTCCTTCCAAACCAGGGAAACCaTCCAAGGTCCCTATGTGG

Fln Alignment:

Contig13741___IRKSYFIAIFGSVHFVLSQLPNFNSVVGISLAAAVMSLSYSTIxxxxxxxxxxxxxxxxxxxxxxxxxxxFNVFNALGNVAFAYAGHNVVLEIQATIPSKPGK
D5A7Z1________________ISNNLYMAIFGAAQVLLSQIPNFSKIWWLSTLAAVMSLTYSFIxxxxxxxxxxxxxxxxxxxxxxxxxxxWNIFQALGNIAFAYSFSMILVEIQDTVKSPPAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain