SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13700

Length: 220 nt

UniGene Fasta

>uagpf_v2_unigene13700
CGTCGTGACCTTGGCTGTCACGATCGGCCCAAGGAAGTTGTAATTACCAAGTGTTATCACTTGTTTTGTGGCCCTTGTATTCAACGCAACTTGGAGATTCGTCACCGCAAATGTCCAGGGTGCGGTACAGCTTTCGGACAAAATGATGTACGGACAGTATACATATGAATATCATCGGGCATGGTGAAGAGGAAGTTGATGATGGTGGGCCTGCATCCAA

Ace file of the UniGene uagpf_v2_unigene13700

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3848	3/4
SustainPine v2.0	sp_v2.0_unigene74520	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp\|Q8RXD6.1\|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb\|AAL91211.1\| unknown protein [Ar	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein of unknown function DUF716, TMEM45	IPR006904	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABH9

Fln msg: your sequence is shorter than subject: 56 - 205

Fln protein: RRDLGCHDRPKEVVITKCYHLFCGPCIQRNLEIRHRKCPGCGTAFGQNDVRTVYI*

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACGATCGGCCCAAGGAAGTTGTAATTACCAAGTGTTATCACTTGTTTTGTGGCCCTTGTATTCAACGCAACTTGGAGATTCGTCACCGCAAATGTCCAGGGTGCGGTACAGCTTTCGGACAAAATGATGTACGGACAGTATACATATGA___ATATCATCGGGCATGGTGAAGAGGAAGTTGATGATGGTGGGCCTGCATCCAA

Fln Alignment:

Contig13700___CHDRPKEVVITKCYHLFCGPCIQRNLEIRHRKCPGCGTAFGQNDVRTVYI
D5ABH9________________CMDKMKEETTTICGHVFCKKCIVRAIEV-YKQCPSCRKKLTMKSIHRIYI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
67	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain