SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13643

Length: 413 nt

UniGene Fasta

>uagpf_v2_unigene13643
CGTCGTGACCTTGGCTGTCACTCATGGGTTTTTATGTTGCTGTGCTATTGCTGATGAGCAGCAGTGCATTGGGTCGGTTTGTGGTTGAGAAGAACAGTATAAATGTGATAACTCCTGAATCATTGACAGGGAAGAGACAGAGTGCTATTGGAAATTTTGGTGTTCCAGATTATGGAGGGAGTATGATAGGTAAAGTGGTGTATCCAGAGAAAGGAAGAAATGGCTGCAAATCATTTGAGGAATTGGATGTTGTCTTCAACAAATCGGAGTCTCCATCATATCCCCTTTTTGTCTTGACAGATCGCGGAGAGTGCTACTTTGCATTGAAGGTATGGAATGCACAAAACGCCGGCGCTGCTGCTGTTCTTGTTGCAGATGACCGCGATGAGCCTCTCATAACTATGGATTCTCCT

Ace file of the UniGene uagpf_v2_unigene13643

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8698	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar-sorting receptor 3 [Arabidopsis thaliana] ref\|NP_849955.1\| vacuolar-sorting receptor 3 [Arabidopsis thaliana] sp\|O80977.1\|VSR3_ARATH RecName: Full=Vacuolar-sorting receptor 3; Short=AtVSR3; AltName: Full=BP80-like protein a'; Short=AtBP80a'; AltN	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	vacuolar-sorting receptor 7-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	80%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	80%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%
Blast2go	receptor activity	GO:0004872	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	80%
Blast2go	Golgi transport complex	GO:0017119	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX7

Fln msg: Distance to subject end: 488 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 130 - 628

Fln protein: MGFYVAVLLLMSSSALGRFVVEKNSINVITPESLTGKRQSAIGNFGVPDYGGSMIGKVVYPEKGRNGCKSFEELDVVFNKSESPSYPLFVLTDRGECYFALKVWNAQNAGAAAVLVADDRDEPLITMDSP

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGGGTTTTTATGTTGCTGTGCTATTGCTGATGAGCAGCAGTGCATTGGGTCGGTTTGTGGTTGAGAAGAACAGTATAAATGTGATAACTCCTGAATCATTGACAGGGAAGAGACAGAGTGCTATTGGAAATTTTGGTGTTCCAGATTATGGAGGGAGTATGATAGGTAAAGTGGTGTATCCAGAGAAAGGAAGAAATGGCTGCAAATCATTTGAGGAATTGGATGTTGTCTTCAACAAATCGGAGTCTCCATCATATCCCCTTTTTGTCTTGACAGATCGCGGAGAGTGCTACTTTGCATTGAAGGTATGGAATGCACAAAACGCCGGCGCTGCTGCTGTTCTTGTTGCAGATGACCGCGATGAGCCTCTCATAACTATGGATTCTCCT

Fln Alignment:

Contig13643___FYXXXXXXXXXXXXGRFVVEKNSINVITPESLTGKRQSAIGNFGVPDYGGSMIGKVVYPEKGRNGCKSFEELDVVFNKSESPSYPLFVLTDRGECYFALKVWXXXXXXXXXXXXXDDRDEPLITMDSP
B8LPX7________________FYVVVLLLMSSSVSGRFVVEKNSITVIAPYSLRGKRQSAIGNFGVPDYGGTMIGKVVYPEKGKDACKSFEEFGVSFNKSNSHSDPVFVLIDRGDCYFALKVWNAQNAGAAAVLVADDRDEPLITMDSP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain