SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13634

Length: 439 nt

UniGene Fasta

>uagpf_v2_unigene13634
CGTCGTGACCTTGGCTGTCACTCAAATTTTTTTGTTTTCGTGTGGGAGGCATTACAAGACACAACACTCATAATTTTGATGGTTTGTGCGGCCCTGTCACTTGTTTTCGGCATAAAAACTGAAGGCATTAAGGAAGGGTGGTTTGATGGTGGGAGTATATTTTTTGCTGTGATCCTTGTCATTTTTGTTACAGCAATCAGTGATTACAGACAATCTCTTCAATTCCAAAATCTGAATGAGGAGAAGAGAAACATTCAACTTCAGGTGATCAGAGGTGGAAGAAGAAGTAAAGTTTCCATATTCGATCTTCTTGTTGGTGATGTTGTTCCCCTCAATATTGGTGATCAGGTCCCTGCAGATGGCATCCTTATTGAAGGACATTCACTATCAATTGATGAATCTAGTATGACTGGGGAGAGCAAATATGTTTAATGATAAG

Ace file of the UniGene uagpf_v2_unigene13634

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene510	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Autoinhibited calcium ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IN45_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	calcium-transporting atpase plasma membrane-type-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	78%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	78%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 757 aas, your sequence is shorter than subject: 144 - 955

Fln protein: RRDLGCHSNFFVFVWEALQDTTLIILMVCAALSLVFGIKTEGIKEGWFDGGSIFFAVILVIFVTAISDYRQSLQFQNLNEEKRNIQLQVIRGGRRSKVSIFDLLVGDVVPLNIGDQVPADGILIEGHSLSIDESSMTGESKYV*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTTTTGTTTTCGTGTGGGAGGCATTACAAGACACAACACTCATAATTTTGATGGTTTGTGCGGCCCTGTCACTTGTTTTCGGCATAAAAACTGAAGGCATTAAGGAAGGGTGGTTTGATGGTGGGAGTATATTTTTTGCTGTGATCCTTGTCATTTTTGTTACAGCAATCAGTGATTACAGACAATCTCTTCAATTCCAAAATCTGAATGAGGAGAAGAGAAACATTCAACTTCAGGTGATCAGAGGTGGAAGAAGAAGTAAAGTTTCCATATTCGATCTTCTTGTTGGTGATGTTGTTCCCCTCAATATTGGTGATCAGGTCCCTGCAGATGGCATCCTTATTGAAGGACATTCACTATCAATTGATGAATCTAGTATGACTGGGGAGAGCAAATATGTTTAATGATAAG

Fln Alignment:

Contig13634___QVIRGGRRSKVSIFDLLVGDVVPLNIGDQVPADGILIEGHSLSIDESSMTGES
B8LQS1________________KVLRDGRWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGES

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
123		25	75		1.0
124	75		25		1.0
125	75			25	1.0
127	25		75		1.0
129	75	25			1.0
133	75		25		1.0
134	75	25			1.0
135			75	25	1.0
137	75			25	1.0
138	75	25			1.0
139	25		75		1.0
140		25	75		1.0
141			75	25	1.0
142		25		75	1.0
143	25		75		1.0
198	85		14		0.993533
313		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain