SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13601

Length: 742 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13601

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8476	19/20

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AEE31353.1\| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	leucine-rich repeat protein kinase-like protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%
Blast2go	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	77%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	77%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	transmembrane receptor protein tyrosine kinase activity	GO:0004714	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
189	16	16			0.988813
190	83		16		0.994512
192		16	83		0.994512
194	83			16	0.994512
197		16	83		0.994512
201		12	12	75	0.975346
204	75	12		12	0.975346
206			75	25	1.0
207		87	12		0.992554
211	75	25			1.0
212	12	75		12	0.975346
214			12	87	0.992554
215			12	87	0.992554
216	87	12			0.992554
220		12		87	0.992554
221	12		87		0.992554
223	87	12			0.992554
370			14	85	0.993533
374		85	14		0.993533
375	14			85	0.993533
377	85	14			0.993533
382		20		80	0.995493
384	80		20		0.995493
385	80			20	0.995493
386	80	20			0.995493
389	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain