SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13600

Length: 237 nt

UniGene Fasta

>uagpf_v2_unigene13600
CGTCGTGACCTTGGCTGTCACTCATCGTCTTGGCAGGTACCTTGCTGCAGCAGCTGAGAATGTTGTGTCAATATTTGATGTCGAGACTGGAACTTGCTTGCATTCTCTACAGAGACATACAAAGCCTGTGCACTCTGTTTGCTGGGATGCAAAAGGAATTATGTGGCATCTGTTAGTGAGGATTCAGTGAGAGTATGGAACCTTGGTTCTGGAGTGATGGAGAATGTGTACATGAAC

Ace file of the UniGene uagpf_v2_unigene13600

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene619	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00400, WD40, WD domain, G-beta repeat	-	-	1.0e-07	44%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	transcriptional corepressor leunig	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	83%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	83%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	83%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 157 and 157, and overlapping frame ERROR between 213 and 213, Distance to subject end: 74 aas, your sequence is shorter than subject: 79 - 931

Fln protein: VVTLAVTHRLGRYLAAAAENVVSIFDVETGTCLHSLQRHTKPVHSVCWDAKxxYVASVSEDSVRVWNLGxxxDGECVHE

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTCTTGGCAGGTACCTTGCTGCAGCAGCTGAGAATGTTGTGTCAATATTTGATGTCGAGACTGGAACTTGCTTGCATTCTCTACAGAGACATACAAAGCCTGTGCACTCTGTTTGCTGGGATGCAAAAxxxxxxTATGTGGCATCTGTTAGTGAGGATTCAGTGAGAGTATGGAACCTTGGTTCxxxxxxTGATGGAGAATGTGTACATGAAC

Fln Alignment:

Contig13600___RLGRYLAAAAENVVSIFDVETGTCLHSLQRHTKPVHSVCWDAKGNYVASVSEDSVRVWNLGSGSDGECVHE
Q9FUY2________________RVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
64			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain