SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13552

Length: 481 nt

UniGene Fasta

>uagpf_v2_unigene13552
CGTCGTGACCTTGGCTGTCACTCAAGGACGGAGGTTTCTTTTGTCAGCTGTTCCTTATAGTCAGAACATCACTTTTGGTGTTGAAGGAGCTTTTATCTATTCTTGCTGATGCACCAGCACCACCTACCTCAGAAGTTAGTTGTTCTCGTGATTGTTCAGATGTTTGTAGCAATTCATATAAAAAGGCCACATCACAATCTATATCTTCTCTCTGTCCATCAAAAGTGCGAGCTATGTTGGCATCCCGTGCTTGTCGTTCATCTGTGATGATTGGTGATGCACTGTGCAAGAAAGATATGGAAACGATTCTCCAACATTTATCAACCCTCAATTCTCCTTGGAATTGCCCACATGGTCGACCGACCATGAGGCATTTGGTTGATGTGACAACAGTGTATCGAAGATAGCTTTTCAACGACTCTGCACAAGAGTGTCATTATTTTTTTGTATTGAATGGGTCACGATTATTTATTCTAAATGA

Ace file of the UniGene uagpf_v2_unigene13552

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4211	4/7
SustainPine v2.0	sp_v2.0_unigene73219	2/7

Source	Descriptions	Term	Type	Identity
AutoFact	DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb\|AAL01156.1\| DNA mismatch repair protein [Arabidopsis thaliana] gb\|AEE82175.1\| DNA mismatch repair protein PMS2 [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dna mismatch repair protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	73%
Blast2go	DNA recombination	GO:0006310	Biological Process	73%
Blast2go	mismatch repair	GO:0006298	Biological Process	73%
Blast2go	pollen development	GO:0009555	Biological Process	73%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	DNA mismatch repair protein	IPR002099	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA mismatch repair, conserved site	IPR014762	-	-
Sma3	DNA mismatch repair protein, N-terminal	IPR014763	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Post Meiotic Segregation 2	IPR015434	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB93

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: S*PWLSLKDGGFFCQLFLIVRTSLLVLKELLSILADAPAPPTSEVSCSRDCSDVCSNSYKKATSQSISSLCPSKVRAMLASRACRSSVMIGDALCKKDMETILQHLSTLNSPWNCPHGRPTMRHLVDVTTVYRR*

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGACGGAGGTTTCTTTTGTCAGCTGTTCCTTATAGTCAGAACATCACTTTTGGTGTTGAAGGAGCTTTTATCTATTCTTGCTGATGCACCAGCACCACCTACCTCAGAAGTTAGTTGTTCTCGTGATTGTTCAGATGTTTGTAGCAATTCATATAAAAAGGCCACATCACAATCTATATCTTCTCTCTGTCCATCAAAAGTGCGAGCTATGTTGGCATCCCGTGCTTGTCGTTCATCTGTGATGATTGGTGATGCACTGTGCAAGAAAGATATGGAAACGATTCTCCAACATTTATCAACCCTCAATTCTCCTTGGAATTGCCCACATGGTCGACCGACCATGAGGCATTTGGTTGATGTGACAACAGTGTATCGAAGATAG___CTTTTCAACGACTCTGCACAAGAGTGTCATTATTTTTTTGTATTGAATGGGTCACGATTATTTATTCTAAATGA

Fln Alignment:

Contig13552___ADAPAPPTXXXXXXXXXXXXXXXXYKKATSQSISSLCPSKVRAMLASRACRSSVMIGDALCKKDMETILQHLSTLNSPWNCPHGRPTMRHLVDVTTVYRR
D5AB93________________ADAPAPPTSEVSDSLDCSDVCSNSYKKAIPQSISALCPSRVRAMLASRACRSSVMIGDALCKKDMETILQHLSTLNSPWNCPHGRPTMRHLVDLTTVYRR

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
109		33	66		0.997452
110	66		33		0.997452
117	66			33	0.997452
118			66	33	0.997452
119		66	33		0.997452
120	66		33		0.997452
122		66		33	0.997452
123	66		33		0.997452
124		66		33	0.997452
233	83	16			0.994512
235		83		16	0.994512
236			16	83	0.994512
238		16		83	0.994512
239		16	83		0.994512
245	83		16		0.994512
248	16	83			0.994512
252		16	83		0.994512
253	16	83			0.994512
373	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain