SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13544

Length: 800 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13544

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2714	9/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase	-	-	2.0e-39	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	80%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	80%
Blast2go	isomerase activity	GO:0016853	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	0.0	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
38		33	66		0.997452
42			33	66	0.997452
45		66		33	0.997452
46	33	66			0.997452
47	33			66	0.997452
48			33	66	0.997452
49	33		66		0.997452
50	33		66		0.997452
51	33	66			0.997452
55	33			66	0.997452
56	33	66			0.997452
58		66	33		0.997452
59		33		66	0.997452
60		66	33		0.997452
162		14	85		0.993533
163	14		85		0.993533
164		28		71	1.0
257		80	20		0.995493
259		20		80	0.995493
260			20	80	0.995493
263	20			80	0.995493
265		20		80	0.995493
266	80			20	0.995493
267	80			20	0.995493
270		20		80	0.995493
271	80			20	0.995493
272	80		20		0.995493
274	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain