SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13496

Length: 990 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13496

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16234	36/40
SustainPine v2.0	sp_v2.0_unigene76907	3/40

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase I-like [Oryza sativa Japonica Group]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	casein kinase i isoform delta-like	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Distance to subject end: 261 aas, your sequence is shorter than subject: 219 - 481

Fln protein: MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG

Protein Length: 220

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGATGTTGGTTGTGAGTTTGCTTGCTCTATTTGCTCTTCCGCTTCCTCCTATCTTTCTTCATTTTTAACTCCTGAAAGGTGGTTGGCTCACAATTCTCATACAAATACATACAGACAGATAGATCTGTCTACACCTAAAATGGTCATGGTGATGGTCAAGATTTGAGAAGATCTGTGTGTAAGATAACGATGCGGGAATGGATTCTTCTGCGATGAATAAATCCCTGGGAAAAGGCGAGGGATCGATTTGATTTGGGGCAAATTTTGTTATTTAGGGACGGTGAAGCGAGGTTATTAACTGTATGGG_-_ATGGAGCCTCGCGTGGGTAACAAATACAGACTCGGCCGCAAGATTGGCAGCGGCTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAGTCCAATGAGGAGGTGGCGATCAAGCTGGAAAATGTGAAGACAAAGCATCCACAACTTGTATATGAGGCCAAGTTGTACAGGCTCCTTCAAGGAGGAACTGGTATTGCAAATGTAAGATGGTTTGGTGTGGAAGGTGACTATAATGTCCTTGTCATGGACTTGTTGGGACCGAGCCTTGAGGATCTCTTTAATTTCTGTAGTCGGAAGCTTTCTCTCAAGACTGTTCTCATGCTTGCAGATCAAATGATAAACAGGATTGAATTTGTGCATTCAAGATGCTTCCTTCATAGAGACGTCAAACCTGATAATTTTCTCATGGGTCTTGGTAGAAGAGCAAACCAGGTCTATGTAATTGATTTCGGACTTGCTAAAAAGTACAGAGATCCTATCAGTCACCAACACATTCCTTACAGAGAGAACAAAAATTTGACTGGAACTGCCCGATATGCAAGCATGAACACTCATCTGGGCATTGAGCAAAGTCGTAGAGATGATTTAGAATCTCTTGGATATGTTCTCATGTATTTTTTGAGGGGCAGTCTTCCATGGCAGGGTCTGAAAGCTGGTAC

Fln Alignment:

Contig13496___MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG
A9NUC1________________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
69			33	66	0.997452
71		66	33		0.997452
72	33	66			0.997452
73		33		66	0.997452
75		66		33	0.997452
77	66		33		0.997452
78			33	66	0.997452
81			33	66	0.997452
85		33		66	0.997452
305		11	88		0.999937
307	88			11	0.999937
315		11	88		0.999937
317			88	11	0.999937
318	88			11	0.999937
321		11		88	0.999937
323	88		11		0.999937
325		11		88	0.999937
327	88			11	0.999937
329	11			88	0.999952
430	85		14		0.999981
431	85			14	0.999981
432		14		85	0.999981
434	85			14	0.999981
436	14		85		0.999981
437	85	14			0.999981
438		14	85		0.999981
439			85	14	0.999981
443		85		14	0.999981
456	88		11		0.923564
457	88			11	0.923564
458	88			11	0.923564
459		11		88	0.923564
461		11		88	0.923564
463	87			12	0.992554
464	87			12	0.992554
465		12	87		0.992554
466	87		12		0.992554
496	83			16	0.994512
497	71	28			1.0
499		14		85	0.993533
500		16		83	0.994512
506	83	16			0.994512
507			83	16	0.994512
508			83	16	0.994512
509		83	16		0.994512
510			16	83	0.994512
512		83		16	0.994512
513			16	83	0.994512
517	83	16			0.994512
518			83	16	0.994512
519		16	83		0.994512
588		25		75	1.0
591		25		75	1.0
593			75	25	1.0
598			75	25	1.0
599	75			25	1.0
601		75	25		1.0
606		25	75		1.0
609			75	25	1.0
610		25	75		1.0
723		62		37	1.0
728	86			13	0.999973
729	86		13		0.999973
734			86	13	0.999973
735	86		13		0.999973
736			14	85	0.999981
737	85	14			0.999981
738	85			14	0.999981
739			15	84	0.999986
741		15		84	0.999986
742	15			84	0.999986
839		10		90	0.90298
840	90		10		0.90298
898			62	37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain