SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13488

Length: 353 nt

UniGene Fasta

>uagpf_v2_unigene13488
CGTCGTGACCTTGGCTGTCACTCAGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTACTGATGCGGCTAAAAGGTTAATGTCGGAAAGACCTCTGCAATCAATGGATAAGATTCCAGATGAGGTTCTTAATGCACATATTTTGGGTCTTTCTGAGGATGCAGAAGACAGGAAGAAATTGTCAGAACTTGGCTTTGCAGGAATGATGCTGACCATAAGGATCATATGTTAGTCTGTGGGGCAATTATTGTCGCAGAGCTTCGGATGGCAGTTTTG

Ace file of the UniGene uagpf_v2_unigene13488

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7300	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative DNA polymerase [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=DNA polymerase eta, putative; Ricinus communis (Castor bean).	-	-	62%
Blast2go	dna polymerase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	81%
Blast2go	Pyrimidine metabolism	00240	81%
Blast2go	Metabolic pathways	01100	81%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	81%
Blast2go	error-prone translesion synthesis	GO:0042276	Biological Process	81%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	81%
Blast2go	endomembrane system	GO:0012505	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	DNA polymerase eta	IPR017061	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SQ81

Fln msg: Overlapping hits, possible frame ERROR between 255 and 249, Distance to subject end: 360 aas, your sequence is shorter than subject: 118 - 560

Fln protein: RRDLGCHSGKADLNLYRDAGSEVVSVLSRKGKCERASIDEVYLDITDAAKRLMSERPLQSMDKIPDEVLNAHILGLSEDAEDxxxxVRTWLCRNDADHKDHMLVCGAIIVAELRMAVL

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTACTGATGCGGCTAAAAGGTTAATGTCGGAAAGACCTCTGCAATCAATGGATAAGATTCCAGATGAGGTTCTTAATGCACATATTTTGGGTCTTTCTGAGGATGCAGAAGACxxxxxxxxxxxxGTCAGAACTTGGCTTTGCAGGAATGATGCTGACCATAAGGATCATATGTTAGTCTGTGGGGCAATTATTGTCGCAGAGCTTCGGATGGCAGTTTTG

Fln Alignment:

Contig13488___GKADLNLYRDAGSEVVSVLSRKGKCERASIDEVYLDITDAAKRLMSERPLQSMDKIPDEVLNAHILGL-SEDAEDRxxIVRTWLCRNDADHKDHMLVCGAIIVAELRMAVL
B9SQ81________________GKADLNVYRNAGSEVVSILARKGRCERASIDEVYLDLTDSAEAMLKDTPPNSLDVIDDEVLKSHVLGLKNENGNDAxxDVREWLCRNDADHRDKLLACGAIIVAELRMQVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain