SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13462

Length: 1349 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13462

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10579	31/35

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ras-related protein rab-2-a	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	89%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	89%
Blast2go	protein transport	GO:0015031	Biological Process	89%
Blast2go	GTP binding	GO:0005525	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	GTPase activity	GO:0003924	Molecular Function	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU85

Fln msg:

Fln protein: MSNMAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHAIANMTIMLIGNKSDLSHRRAVTFEEGQQFAKENGLIFMETSAKTAQNVEEAFIDTAAKIYRKIQDGVFDASNEANGIKVGSAGSAGTSIVGRDFNQRGGCCN*

Protein Length: 215

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGCCTTCAAATTTCCTCCGATTCGCTGTTATTCTCACAATCTTCGCGGGGTGCGGGCCGGCTAGCGAGGAATCTTAGGTTATTTCGGGGCATTTAATCTGATTGTATCCTGCGAGGATTTTCTGGTGTTTTAGATCGAGGGATTCGGCCGGTCAGCCGTACGAATTCTGCGCAATTTGAAAAGACTTTCAACGGATTTTTCAGAGGACTTGATTCAATTATATATTTTGAGGATTTGACGATCACCCAGTGCTTTAGATCGAGGGATTCGGCTGGTCAGCCGTAGGAAATCTGCGAAATTTGAAAGGACTTTCAACGGATTTTTCAGAGGAATTGATTCAATTATATATTTTGAGGATTTTATAGTGTCATAGATCGTGAAGCTGTAAAA_-_ATGTCAAATATGGCGTACGCCTATCTTTTCAAGTATATTATTATAGGAGACACTGGCGTGGGGAAATCATGTCTTCTCCTTCAGTTTACTGATAAACGCTTTCAGCCTGTTCATGACTTGACTATTGGCGTTGAATTCGGAGCACGCATGATAACTATTGAGAACAAGCCCATCAAACTCCAGATCTGGGATACAGCAGGACAAGAGTCTTTTCGGTCAATTACAAGATCTTATTACAGAGGAGCTGCTGGGGCGTTGCTTGTATATGACATAACAAGGAGAGAAACGTTCAATCATCTTGCAACGTGGTTAGAGGACGCACGGCAGCATGCAATTGCAAATATGACAATTATGCTAATTGGAAATAAATCTGACCTATCTCACAGAAGGGCAGTAACTTTTGAGGAAGGGCAACAGTTTGCAAAGGAAAACGGGTTGATATTTATGGAGACTTCTGCAAAAACTGCCCAAAATGTTGAAGAGGCATTTATCGATACCGCTGCTAAAATATATCGCAAGATTCAGGATGGAGTATTTGATGCATCTAACGAGGCCAACGGTATCAAAGTTGGATCTGCTGGTAGTGCTGGAACCAGTATTGTAGGCAGAGATTTTAATCAGAGAGGGGGGTGTTGTAATTGA___CAACATATATCTCCAGATACAAACAAACTGCATATTTGAGTGCATCCACATTGTATGGCAGACTGAACATTAAAATGTTTGTTTTATCACTAATATGTGCATAGATTTGAGTTACGAATTTGTGGTCTGGGGCAGCTTAGTTTCAATATGCTGCTTCTGACTGCAATAAAGGATTAATATTCACAGTTCGATCCGATCTATTCAATTCGATTCATTGGTTCAGCTGCTCATGTTCTGCAACTGGTTGATTCTTGGGTTCAGCAGCTCATGTTCTGCAACTGATTGATTC

Fln Alignment:

Contig13462___MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHAIANMTIMLIGNKSDLSHRRAVTFEEGQQFAKENGLIFMETSAKTAQNVEEAFIDTAAKIYRKIQDGVFDASNEANGIKVGSAGSAGTS-IVGRDFN--QRGGCCN
A9NU85________________MSYAYLFKYIVIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIGNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHANSNMTIMLIGNKCDLDHRRAVSTEEGAQFAKEHGLVFMETSAKTAQNVEEAFINTAAKIYQKIEEGIFDVSNETSGIKVGYGGGAGTAGSVRNDYTAPQSSGCCN

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
302		16		83	0.994512
314		16	83		0.994512
318	83			16	0.994512
325	83	16			0.994512
335	16		83		0.994512
361	85	14			0.993533
430		14		85	0.993533
432			85	14	0.993533
440		85		14	0.993533
442	85		14		0.993533
443			14	85	0.993533
447			14	85	0.993533
452		14	85		0.993533
455		14		85	0.993533
470		71		28	1.0
479		12	87		0.992554
481			87	12	0.992554
486		12		87	0.992554
488	87			12	0.992554
491			12	87	0.992554
497	12	87			0.992554
500		12		87	0.992554
501	12	87			0.992554
914		20		80	0.995493
919		83	16		0.994512
920	16			83	0.994512
921		16	83		0.994512
924	71			28	1.0
925	71		28		1.0
926	71		28		1.0
927	71	28			1.0
929	71		28		1.0
931	71	28			1.0
932	28			71	1.0
934			71	28	1.0
996		16	83		1.0
997		83	16		1.0
1000	16		83		1.0
1001		16		83	1.0
1002	83	16			1.0
1003			83	16	1.0
1009		5	83	11	0.999887
1010	88	11			0.999937
1120	43	56			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain