SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13452

Length: 724 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13452

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1039	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	anaphase-promoting complex subunit 6 [Arabidopsis thaliana] sp\|B3DNN5.1\|CDC16_ARATH RecName: Full=Anaphase-promoting complex subunit 6; AltName: Full=Cell division cycle protein 16 homolog; Short=CDC16 homolog; AltName: Full=Cyclosome subunit 6; AltName:	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	cell division	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	82%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	82%
Blast2go	cell division	GO:0051301	Biological Process	82%
Blast2go	binding	GO:0005488	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
13		33	66		0.997452
18	33			66	0.997452
23		66		33	0.997452
24	66		33		0.997452
25			33	66	0.997452
29		66	33		0.997452
31		33		66	0.997452
33	66	33			0.997452
35	66	33			0.997452
193		80	20		0.995493
195		20	80		0.995493
200		20		80	0.995493
204		80	20		0.995493
205	80		20		0.995493
206	80	20			0.995493
211	33	66			0.997452
213	66			33	0.997452
214		33	66		0.997452
215	33		66		0.997452
520	75			25	0.996473
523			25	75	0.996473
528	75			25	0.996473
529	75		25		0.996473
532		75		25	0.996473
533			25	75	0.996473
537	25			75	0.996473
538		75	25		0.996473
539			25	75	0.996473
541		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain