SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13449

Length: 617 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13449

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28303	4/8
SustainPine v2.0	sp_v2.0_unigene33990	3/8

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid kinase-like protein [Arabidopsis thaliana] gb\|AAN12957.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30713.1\| amino acid kinase-like protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	63%
Blast2go	aspartate glutamate uridylate kinase family protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
25	66		33		0.997452
26	66			33	0.997452
31	66	33			0.997452
32	66	33			0.997452
34	66			33	0.997452
35	66		33		0.997452
37	66	33			0.997452
38	66			33	0.997452
39			33	66	0.997452
41		33	66		0.997452
42	33			66	0.997452
43	66	33			0.997452
281	80	20			0.995493
283			80	20	0.995493
285	80		20		0.995493
286	80			20	0.995493
290	80	20			0.995493
291	80			20	0.995493
295			20	80	0.995493
296		20	80		0.995493
297	80			20	0.995493
302		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain