SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13412

Length: 423 nt

UniGene Fasta

>uagpf_v2_unigene13412
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTACTCATTGCTGAGAAATTTAGGCTGCTTGGATGAAGACATGGCACGTGTTTATATAGCTGAAGTTGTTCTTGCGTTGGAGTACTTGCATTCATTACATGTAGTGCACAGAGATCTGAAGCCAGACAACTTGCTGATTGCCCACGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGATTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTGGGAGAAGATGAAGATTCCTTATGTGCAACTGAGCAGTCTGACCAAAGAGAAAGACGTACAAAAGCGCTCAGC

Ace file of the UniGene uagpf_v2_unigene13412

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5791	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein kinase C.	EC:2.7.11.13	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Phosphatidylinositol signaling system	04070		0.0	81%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	81%
Blast2go	protein kinase C activity	GO:0004697	Molecular Function	81%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL96

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 141 - 407

Fln protein: RRDLGRRDLGCHSFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTMLLGEDEDSLCATEQSDQRERRTKALS

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTACTCATTGCTGAGAAATTTAGGCTGCTTGGATGAAGACATGGCACGTGTTTATATAGCTGAAGTTGTTCTTGCGTTGGAGTACTTGCATTCATTACATGTAGTGCACAGAGATCTGAAGCCAGACAACTTGCTGATTGCCCACGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGATTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTGGGAGAAGATGAAGATTCCTTATGTGCAACTGAGCAGTCTGACCAAAGAGAAAGACGTACAAAAGCGCTCAGC

Fln Alignment:

Contig13412___FYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSK
B8LL96________________YFTFQDASNIYLGLESCDGGELFDQISRKACISEDEARFYIAEIVDVLEYLHKLGLIHRDVKPENILLTADGHVKLADFGSVK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
16		66		33	0.997452
21		33	66		0.997452
23		33	66		0.997452
26		66		33	0.997452
29			66	33	0.997452
31		66		33	0.997452
32			33	66	0.997452
37	66		33		0.997452
38		66		33	0.997452
40		66		33	0.997452
41	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain