SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13352

Length: 310 nt

UniGene Fasta

>uagpf_v2_unigene13352
CGTCGTGACCTTGGCTGTCACTCAGTAGGAGGATTGACTCCCTGGAAGCCAAGCATATGGGACTCGTCCCTTGGGTGTATTCGACAAAGTCGGATATGGACGAAAATGTTCACAAAATTGCCAGGGATATTGCCGCGAAATCTCCGCTTGCTGTAATCGGAACGAAGGCCGTTCTGTTGAATTCCAGGGATTTGTCGGTGCACAAGGGTTTGGATTATGTGGCTACTTGGAATGCTGCGATGCTTTCGTCGACGGATGTGCAAGAGGTCTTCGCTGCCCAAGTGGAGAAGCGAAAGCCCATGTTTTCCAA

Ace file of the UniGene uagpf_v2_unigene13352

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9407	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 n=3 Tax=Arabidopsis RepID=Q9FHR8_ARATH	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	enoyl hydratase-like protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Enoyl-CoA hydratase.	EC:4.2.1.17	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	71%
Blast2go	Fatty acid metabolism	00071	71%
Blast2go	Valine, leucine and isoleucine degradation	00280	71%
Blast2go	Geraniol degradation	00281	71%
Blast2go	Lysine degradation	00310	71%
Blast2go	Benzoate degradation	00362	71%
Blast2go	Tryptophan metabolism	00380	71%
Blast2go	beta-Alanine metabolism	00410	71%
Blast2go	alpha-Linolenic acid metabolism	00592	71%
Blast2go	Aminobenzoate degradation	00627	71%
Blast2go	Propanoate metabolism	00640	71%
Blast2go	Butanoate metabolism	00650	71%
Blast2go	Limonene and pinene degradation	00903	71%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	71%
Blast2go	Biosynthesis of plant hormones	01070	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid catabolic process	GO:0009062	Biological Process	71%
Blast2go	delta3,5-delta2,4-dienoyl-CoA isomerase activity	GO:0051750	Molecular Function	71%
Blast2go	enoyl-CoA hydratase activity	GO:0004300	Molecular Function	71%
Blast2go	peroxisome	GO:0005777	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase, core	IPR001753	-	0.0	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY4

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 102 - 273

Fln protein: S*PWLSLSRRIDSLEAKHMGLVPWVYSTKSDMDENVHKIARDIAAKSPLAVIGTKAVLLNSRDLSVHKGLDYVATWNAAMLSSTDVQEVFAAQVEKRKPMFS

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGGAGGATTGACTCCCTGGAAGCCAAGCATATGGGACTCGTCCCTTGGGTGTATTCGACAAAGTCGGATATGGACGAAAATGTTCACAAAATTGCCAGGGATATTGCCGCGAAATCTCCGCTTGCTGTAATCGGAACGAAGGCCGTTCTGTTGAATTCCAGGGATTTGTCGGTGCACAAGGGTTTGGATTATGTGGCTACTTGGAATGCTGCGATGCTTTCGTCGACGGATGTGCAAGAGGTCTTCGCTGCCCAAGTGGAGAAGCGAAAGCCCATGTTTTCCAA

Fln Alignment:

Contig13352___RRIDSLEAKHMGLVPWVYSTKSDMDENVHKIARDIAAKSPLAVIGTKAVLLNSRDLSVHKGLDYVATWNAAMLSSTDVQEVFAAQVEKRKPMFS
A9NUY4________________RRIDALEAKQMGLVQKVYSTKSDMDENVGKIARDIASKSPLAVIGTKTVLMNSRDLSVAKGLDYVATWNAATLSSTDVNEVFTAQVEKRKPMFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain