SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13327

Length: 1410 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13327

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21840	5/76
SustainPine v2.0	sp_v2.0_unigene22729	68/76

Source	Descriptions	Term	Type	Identity
AutoFact	gamma carbonic anhydrase 2 [Arabidopsis thaliana] gb\|AAG52641.1\|AC079677_5 unknown protein; 6976-8939 [Arabidopsis thaliana] gb\|AAK76653.1\| unknown protein [Arabidopsis thaliana] gb\|AAM44984.1\| unknown protein [Arabidopsis thaliana] gb\|AEE32144.1\| gamma c	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	86%
Blast2go	anther dehiscence	GO:0009901	Biological Process	86%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	regulation of reactive oxygen species metabolic process	GO:2000377	Biological Process	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX3

Fln msg:

Fln protein: MGTLGRVIYMAGHLFRETGQAIDRLGCRLQGNYGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIVVGSGTNIQDNTLVHVAKTNLSGKVLPTLIGNNVTIGHGAVLHGCTVEDEAFVGMGATLLDGVFVEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFISQSALNYQSLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELIVPDRVIEGKLPAREPF*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTCCTAGGAACTATGAGCATGTCTTGTGAGGACATTAGCAGGCCTGTAGACACTATACATTATCCATGTTGTTTTAATCATCTCCAAGTCCATGGTGGACGTGAAAACTTCGTCTAATAAGATTAATAGGTCTGACCTTGGTTGTTATTCATTTTCCGTTCGTCCCCTGATTCATGCTGGCTTCCTTACTTTCCATCTAACAGGATATAGTTCCCAGCCATTCGGAGCAGGGCTCCATATATTGATCAGAACTGAGAGCTTACAGTTTGCTCATACTTTTAGAAACTGACGA_-_ATGGGGACTCTCGGAAGAGTTATCTACATGGCTGGGCATTTGTTTCGCGAGACGGGGCAGGCCATCGACCGTCTAGGATGCCGTCTTCAGGGCAATTACGGCTTCCAAGAGCAATTATCGAGGCATAGAACACTGATGAACATCTTTGAAAAAGCTCCAAGTCTGCACAGAGATGTCTTTGTTGCTCCAAGTGCAGCTGTTATGGGAGATGTAAAAGTGGGCCAAGGATCATCAATTTGGTATGGCTCTGTTCTTCGAGGGGACGTAAATAGCATAGTGGTTGGTTCTGGTACAAATATACAGGACAACACTCTTGTGCATGTTGCAAAAACAAATCTTAGCGGAAAGGTATTGCCAACTCTTATCGGCAACAATGTTACAATTGGTCACGGTGCTGTGCTTCATGGATGTACTGTTGAGGATGAGGCTTTTGTAGGCATGGGTGCAACTCTTCTTGATGGGGTTTTTGTGGAAAAAAATGCTATGGTTGCAGCTGGGTCGCTTGTGAGACAAAATGCCAGAATACCCTCTGGAGAGGTGTGGGCAGGGAATCCTGCAAAATTTTTACGGAAGCTTACCGATGAAGAGATTGAATTCATCTCACAATCGGCTTTAAATTATCAAAGCTTAGCAGAAATGCATGCAAGAGAAAATGCAAAGAGCTATGATGAAATTGAGGCATATAAGGTGCTGCGGAAGAAATTAGCTAGGCAGAGTGATGACTATGATTCTCATTTGGGTGTTGTTAGGGAGTTTCCCCCAGAATTGATTGTTCCAGACCGTGTTATAGAAGGCAAACTTCCAGCAAGAGAACCTTTCTAA___GATTCTGGATCTTCTACCGGGCATGATTTTGTGGAGCATTGTAATAAGTACCTGACATGTTTTCCCAGGTCGAGTCACCATAGTTTGCCCTTTTTGTATTAGCTGTTTGTATCTCCCTCTATCCTGGGGATATCAATAGCCGATCTTGCTGTTTTTTCAAATTATATTTAAACGAATTACTTAATCAATTTGTTTTTGGACGAACATTTGAGTCGTATGGTAAATAAATTTAACAACATTGTGTCATATGCACACATTGCATTAATAC

Fln Alignment:

Contig13327___MGTLGRVIYMAGHLFRETGQAIDRLGCRLQGNYGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIVVGSGTNIQDNTLVHVAKTNLSGKVLPTLIGNNVTIGHGAVLHGCTVEDEAFVGMGATLLDGVFVEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFISQSALNYQSLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELIVPDRVIEGKLPAREPF
A9NZX3________________MGTLGKVIYMAGFLIRETGQAIDRFGCRLQGNHGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIMVGSGTNIQDNTLVHVAKTNISGKVLPTIIGNKVTIGHGAVLHGCTVEDEAFVGMGATLLDGVVLEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFILQSALNYQNLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELVVPDRVIEGKLPAREPY

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
159		50	50		1.0
164	50			50	1.0
165	50		50		1.0
171	50			50	1.0
175		50		50	1.0
178			50	50	1.0
179		50		50	1.0
181		50		50	1.0
210		13	59	4	1.0
211	9	86		4	0.999642
212	27			72	1.0
248		92	8		0.999718
249		92		8	0.999718
250	92	8			0.999718
252		92		8	0.999718
253		92	8		0.999718
256		8		92	0.999718
258			92	8	0.999718
259			92	8	0.999718
260	92		8		0.999718
263	92			8	0.999718
265		8	92		0.999718
266	8		92		0.999718
270	8	92			0.999718
548		89		10	0.999919
550	78		10	10	0.999769
551	78	10		10	0.999769
552		11	88		0.999952
554	88	11			0.999952
662	20			80	0.995493
665		20		80	0.995493
896			85	14	0.993533
897	85		14		0.993533
899		14	85		0.993533
904		83	16		0.999991
1029		27		72	1.0
1234			25	75	1.0
1251	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain