SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13324

Length: 389 nt

UniGene Fasta

>uagpf_v2_unigene13324
CGTCGTGACCTTGGCTGTCACTCAAGCATGCAATGAGACCGGGCAATGGGAGATGTCAGTGGTGCAGTCAAGCACTATAATGATTCTATCGAGTCTCTTTCAAAATTATCTACTGATGATGCTGAGGTTGTGCATGCACGTTCGGTGTCTCTCAACAAAATTGGAGATCTTAAGTACTATGACAATGATCTTTTAGCGTCACAATTGTACTATTCTCAGGCATTGGATGTTCGTAGAAAGGCCATTAAAGATTTTACAAAACTATCCTCACAGATAATTGACATTGCAGTTTCATTGGCTAAGGTTGCTGATGTAAACAGAGCCCTAGGTAATGAAAAAGTTGCTATAGAGAGGTTTCAAGAAGCAGTGAAATGCTTGGAATGCCTTTC

Ace file of the UniGene uagpf_v2_unigene13324

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene110	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	zinc ion binding protein [Arabidopsis thaliana] gb\|AAK95259.1\|AF410273_1 AT3g54360/T12E18_50 [Arabidopsis thaliana] emb\|CAB81801.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAM63273.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAN18187.	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	62%
Blast2go	binding protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	72%
Blast2go	response to cold	GO:0009409	Biological Process	72%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	72%
Blast2go	response to salt stress	GO:0009651	Biological Process	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%
Blast2go	plastid	GO:0009536	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Domain of unknown function DUF239	IPR004314	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HIW7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 129 - 444

Fln protein: RRDLGCHSSMQ*DRAMGDVSGAVKHYNDSIESLSKLSTDDAEVVHARSVSLNKIGDLKYYDNDLLASQLYYSQALDVRRKAIKDFTKLSSQIIDIAVSLAKVADVNRALGNEKVAIERFQEAVKCLECL

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCATGCAATGAGACCGGGCAATGGGAGATGTCAGTGGTGCAGTCAAGCACTATAATGATTCTATCGAGTCTCTTTCAAAATTATCTACTGATGATGCTGAGGTTGTGCATGCACGTTCGGTGTCTCTCAACAAAATTGGAGATCTTAAGTACTATGACAATGATCTTTTAGCGTCACAATTGTACTATTCTCAGGCATTGGATGTTCGTAGAAAGGCCATTAAAGATTTTACAAAACTATCCTCACAGATAATTGACATTGCAGTTTCATTGGCTAAGGTTGCTGATGTAAACAGAGCCCTAGGTAATGAAAAAGTTGCTATAGAGAGGTTTCAAGAAGCAGTGAAATGCTTGGAATGCCTTTC

Fln Alignment:

Contig13324___RAMGDVSGAVKHYNDSIESLSKLSTDDAEVVHARSVSLNKIGDLKYYDNDLLASQLYYSQALDVRRKAIKDFTKLSSQIIDIAVSLAKVADVNRALGNEKVAIERFQEAVKCLECL
F6HIW7________________RATGDADSAVTYFEESVDFLRKLPADDLEITHTLSVSLNKIGDLKYYDGDLEAARSYYSQSLDVRRNAIKDRSNVPSQILDVAVSLAKVADVNRNVGNEDVAINGFEEAIKLLESL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain