SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13225

Length: 1869 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13225

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7767	22/43
SustainPine v2.0	sp_v2.0_unigene18386	1/43
SustainPine v2.0	sp_v2.0_unigene27792	3/43
SustainPine v2.0	sp_v2.0_unigene61881	14/43
SustainPine v2.0	sp_v2.0_unigene78735	3/43

Source	Descriptions	Term	Type	Identity
AutoFact	CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb\|AEC06308.1\| CBS and transporter associated domain-containing protein [Arabidopsis thaliana]	-	-	64%
FL-Next	sp=DUF21 domain-containing protein At2g14520; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	cbs domain-containing protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system	GO:0012505	Cellular Component	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZQR4

Fln msg:

Fln protein: MSAHEQCCGVQFWIYIAIIVVLVLMAGAMSGLTLGLMSLSVMDLEVLSESGRPQDRKHAAKIMPVVKNQHLLLCTLLICNALAMEALPIFLDSLAPAWGAVLISVTLILMFGEIMPQSVCSRYGLAVGAAMAPVVRVLVWICFPVAWPISKLLDFLLGEGHVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALGLSEKTAEDAMTPISETFAIDVNAKLDRDLMKLILERGHSRVPVYYDQPTNIIGLVLVKNLLSIHPADEVPLKNVTIRKIPRVPADLPLYDILNEFQKGHSHMAVVVRYSEQKDQEMKKTRNTGEDVKIIVDQHSSQVAQDKPLPNKKLLKWKSLPATHTCGEDKGTPKSRRWSRAPSEDILQIAGKQLPKLAEDEEIVGIITMEDVIEEILQEEIFDETDAHDDASAK*

Protein Length: 430

Fln nts: CGTCGTGACCTTGGCTGTCACTGATCCCCTAGCCGCTCCTAAAGCGCCCTTTATGCTCCTAACGATTGTCGGCTACGCAAAGGCATAAAGGTGCTGAAAAATGCATAGCTGTGAGGAATTTGTCAGTCGTAGGTGTAAGGAATTGCGGCGTAGAGTGGTTCTCTGACAGTACTTGTGCTTTTCTTTAACGTGAATTACTATTTTCTTTGAGATTTTGTTGTCCAGGGTCTGGTAAA_-_ATGTCCGCCCACGAACAATGTTGCGGCGTACAGTTCTGGATTTATATTGCTATAATTGTGGTGCTGGTTCTGATGGCGGGTGCAATGTCTGGCTTGACGCTTGGCCTCATGTCACTCAGCGTGATGGATTTGGAGGTACTCTCCGAGTCCGGAAGGCCGCAGGATCGCAAACACGCCGCTAAAATAATGCCTGTGGTGAAAAACCAACATTTGTTGTTGTGTACGCTTCTAATATGCAATGCTCTTGCCATGGAGGCACTTCCAATTTTCCTAGATTCATTGGCCCCAGCATGGGGTGCTGTATTAATATCCGTGACTCTGATACTCATGTTCGGAGAGATTATGCCCCAATCTGTCTGTTCTCGATATGGTTTAGCAGTTGGGGCTGCAATGGCACCAGTGGTTCGTGTACTTGTTTGGATCTGCTTTCCAGTTGCATGGCCAATAAGCAAGCTCTTGGATTTCTTGTTGGGCGAGGGACACGTTGCTCTTTTTCGCAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAATGAGGCAGGAAAAGGTGGAGAACTGACGCATGATGAAACAACAATCATTGCTGGGGCTTTGGGATTATCCGAGAAAACCGCAGAAGATGCAATGACCCCAATTTCAGAAACATTTGCTATTGATGTTAATGCAAAACTGGATAGGGACTTGATGAAGTTGATCTTAGAAAGGGGGCATAGCAGAGTGCCTGTATATTATGACCAACCTACAAATATAATTGGGTTAGTTTTGGTGAAGAATTTGTTGTCTATACATCCTGCAGATGAAGTACCCTTAAAGAATGTGACCATCCGAAAGATTCCTCGTGTTCCAGCTGATTTGCCATTGTATGATATTTTGAATGAGTTTCAGAAAGGCCACAGCCATATGGCTGTAGTAGTAAGGTATTCTGAACAGAAGGATCAAGAAATGAAGAAGACAAGAAATACAGGTGAGGATGTGAAAATCATTGTGGACCAACATTCATCACAAGTTGCCCAAGACAAACCCTTACCAAATAAAAAGCTATTAAAGTGGAAAAGCCTTCCTGCTACTCACACATGTGGTGAAGATAAAGGAACACCAAAGTCAAGGCGGTGGTCTCGCGCACCGTCAGAAGATATTCTTCAAATTGCTGGTAAACAACTTCCAAAGCTTGCAGAGGATGAGGAGATCGTGGGCATAATAACAATGGAAGATGTTATCGAAGAGATTTTGCAGGAGGAGATATTTGACGAGACGGATGCTCATGACGATGCCAGTGCAAAGTAA___GCATCATATTGTTGTTAGCTTCTCACGCTTTGAAGGAATTATAGCATAAAGCAATTATAATAGCTATTTGGATGAACACATTTTTGATAGGAATTTGAAGTCCAGATATGGAAATGTGTATTGTTACTCCACCATTAGGATAAAACCTTGGAAAATATAGTCTCGCATTTTTTTATTGCGAGATATATCTTTTATGTAAATCACATGTTCGTTTGTTTTAGAATTTATTATTTAGAAGGTTTTCAATGTTGTCCATTAATTTTGAGCCCACATTGAAATTGTTTATCTAATTATGTTTCACCATATGAGTATTCTATGAAAATTCGACTTAAAAAAATATTCTACT

Fln Alignment:

Contig13225___MSAHEQCCGVQFWIYIAIIVVLVXXXXXXXXXXXXXXXXXVMDLEVLSESGRPQDRKHAAKIMPVVKNQHXXXXXXXXXXXXXMEALPIFLDSLAPAWGAVLISVTLILMFGEIMPQSVCSRYGLAVGAAMAPVVRVLVWICFPVAWPISKLLDFLLGEGHVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALGLSEKTAEDAMTPISETFAIDVNAKLDRDLMKLILERGHSRVPVYYDQPTNIIGLVLVKNLLSIHPADEVPLKNVTIRKIPRVPADLPLYDILNEFQKGHSHMAVVVRYSEQKD--QEMKKTRNTGEDVKIIVDQHSSQVAQDXXXXXXXXXXXXXXXATHTCGEDKGTPKSRRWSRAPSEDILQIAGKQLPKLAEDEEIVGIITMEDVIEEILQEEIFDET
Q9ZQR4________________MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPNRANSLGS-----RSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDET

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
192		25	25	50	0.995533
193	75		25		0.996473
194	50	25		25	0.995533
195	50	50			1.0
196			75	25	0.996473
197			50	50	1.0
199	75		25		0.996473
201	50	25		25	0.995533
202			25	75	0.996473
204		25	25		0.995533
205	75		25		0.996473
209	75		25		0.996473
210	25			75	0.996473
211		25		25	0.995533
212	25			75	0.996473
213		25		75	0.996473
216	25			75	0.996473
696		90		10	0.90298
703		11		88	0.923564
712			16	83	0.994512
713		16		83	0.994512
722	80	20			0.995493
729	75			25	0.996473
732		25		75	0.996473
791	50	50			1.0
794	50		50		1.0
812	50		50		1.0
834			33	66	0.997452
848	33		66		0.997452
863		33		66	0.997452
986	33	66			0.997452
1007	33		66		0.997452
1008		33		66	0.997452
1160	75		25		0.996473
1166	75		25		0.996473
1173			25	75	0.996473
1187	25			75	0.996473
1353			25	75	0.996473
1356	75			25	0.996473
1358			75	25	0.996473
1360	25		75		0.996473
1361		25	75		0.996473
1363		25	75		0.996473
1364	25		75		0.996473
1440		72		27	1.0
1687			85	14	0.993533
1688	85			14	0.993533
1689	85	14			0.993533
1690	85		14		0.993533
1691	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain