SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13140

Length: 696 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13140

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6843	21/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] emb\|CAB87783.1\| putative protein [Arabidopsis thaliana] dbj\|BAF01166.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED92035.1\| Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]	-	-	6.0e-38	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	surfeit locus protein 2	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Surfeit locus 2	IPR008833	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
56		33		66	0.997452
58		66		33	0.997452
59	66	33			0.997452
60	66		33		0.997452
61	66			33	0.997452
64		33		66	0.997452
66	66			33	0.997452
67	66			33	0.997452
68	66		33		0.997452
69			33	66	0.997452
70		33		66	0.997452
79	20	80			0.995493
113	71	28			1.0
114			85	14	0.999981
116		13	86		0.999973
118	73	13		13	0.999956
119	73		13	13	0.999956
120	86		13		0.999973
121		86		13	0.999973
123	13			86	0.999973
124		13	86		0.999973
125			86	13	0.999973
126	73	26			1.0
127	86			13	0.999973
129			86	13	0.999973
130		13	86		0.999973
144		87		12	0.999964
330	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
672	684	GAT GAT GAT GAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain