SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13131

Length: 1178 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13131

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16630	34/39

Source	Descriptions	Term	Type	e value	Identity
AutoFact	brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] ref\|XP_002878382.1\| brassinosteroid-responsive ring-H2 [Arabidopsis lyrata subsp. lyrata] gb\|AAD27870.1\|AF134155_1 BRH1 RING finger protein [Arabidopsis thaliana] emb\|CAB71076.1\| RING finger protei	-	-	6.0e-35	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	e3 ubiquitin-protein ligase rha1b-like	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	64%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTT7

Fln msg: your sequence is shorter than subject: 170 - 189

Fln protein: MGFPVGYSELLVPRLVLNVAYLLGSIRSTVCWLLHLVGLGEFLETETSYWEDQANPWFDANSSVSAQKIRDLLPVVEFGVLAEGAEDGDVMCAVCLNNMEKFEEIRRLTNCRHIFHRGCLDKWLDHDQRTCPLCRSPLLPDEIEREINEELRTLDPGSNLFADASSVLS*

Protein Length: 171

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTCCTAGTTTGTTTAATCTGGGCACCAGAATTCTGATCCCTTGTTGGATTGCATCGCAATTATGTGACTCCAACTTGCATGCCTTGTCTATAAACGTCGTGACCTTGGCTGTCACTCACTCCTTGCCTCTGCTCTATTCGTCCTTGCAGAGCTATAAATACCTGCCTCTGGTTGCAACAGCCACGGTTGTGGTGCCTCCTTTGAATTTCTAGGCAAAAATTCACTGTTTTCGACATTTTGTTTCACTGATTGAGGCCTTGCCTTGCTTTTCCTTGCACC_-_ATGGGATTTCCTGTTGGATATTCAGAACTTCTCGTCCCTAGGCTGGTCCTTAATGTAGCCTATCTGTTGGGATCTATCAGAAGCACCGTCTGCTGGCTTCTTCATCTTGTGGGTCTTGGAGAGTTTCTCGAAACTGAGACCTCCTACTGGGAAGATCAAGCCAATCCATGGTTCGACGCGAACTCTTCAGTTTCTGCACAGAAGATTCGTGACCTGTTGCCTGTTGTAGAGTTCGGTGTTTTGGCAGAAGGTGCAGAGGATGGCGATGTCATGTGCGCGGTCTGCTTAAACAACATGGAAAAATTTGAAGAGATCCGAAGGCTGACAAATTGCAGACATATCTTTCACAGAGGTTGTTTGGACAAATGGCTTGATCATGACCAGAGGACTTGTCCTCTCTGTAGGTCTCCTTTGCTTCCAGACGAGATTGAAAGAGAAATAAATGAGGAACTCAGAACATTAGACCCCGGTTCGAATCTCTTTGCGGATGCTTCATCAGTCCTTTCGTAG___AGAGGCTCATTAAGAGCAGACTTTTCAGTCTTACTGTAACTACATACTAGTTCCTATATGTATAAACACAAAGATTCAGACAAATGGGCAAAGAAAATCACGGATCGAATCTGGGGGCCGCTTCAAGGTAGCCAAAGTTCGTTTTCTCTTGCATTTTCAGCATAGGCCTCTCTCTCATCTTCAAAGAAATGTTTTATCGAAGAATAATTTATCGAAAAATAATTTGTGGGAACGCTGATTGCTACATTGTCATGACACGGAACTTGCATATGCATATAGTCAGATGCCTGTGTCATGTTGCCCATTCTTTTGTAACATTTTCTTGAAGCAATTTTTATAATGAAATTATCACATGATTTCGC

Fln Alignment:

Contig13131___FPVGYSELLVPRLVLNVAYLLGSIRSTVCWLLHLVGLG-----EFLETETSYWEDQANPWFDANSSVS--AQKIRDLLPVVEFGVLAEG---AEDGDVMCAVCLNNMEKFEEIRRLTNCRHIFHRGCLDKWLDHDQRTCPLCRSPLLPDEIEREI
A9NTT7________________FPTTVSEGVLPILIVNTALSFAIIKDILRSFLQIVGLTTGTEPDFIDPSWPYPPENTPAVSTGHSEAQFIAEEIRQSLPIKRFQSFTDGFVGSDNSHVECAVCLSKFEEGVEIRQLTCC-HLFHRPCLDKWLDHQQITCPLCRSCLISEEAAKNI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
122	20	80			0.995493
123	20		80		0.995493
126	20		80		0.995493
128	20		80		0.995493
129	80			20	0.995493
130	20	80			0.995493
131		80		20	0.995493
134			80	20	0.995493
135			80	20	0.995493
137			20	80	0.995493
139		20		80	0.995493
140	20	80			0.995493
144		25	25		0.995533
145	25		25		0.995533
146		60	40		1.0
147	60			40	1.0
148		80		20	0.995493
193	20		80		0.995493
197		80		20	0.995493
644	75			25	0.996473
645		25	75		0.996473
646	75		25		0.996473
717		90	10		0.90298
718	10			90	0.90298
723			10	90	0.90298
734	10		90		0.90298
792			10	90	0.90298
794			10	90	0.90298
795	10		90		0.90298
797		10	90		0.90298
798			90	10	0.90298
799	90			10	0.90298
800			10	90	0.90298
1021		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain