SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13090

Length: 552 nt

UniGene Fasta

>uagpf_v2_unigene13090
CGTCGTGACCTTGGCTGTCACTCATGGTCAAGGAGATAAATTGCTAGATTACATGGAAAATAAAGCAATATCAATGGGACTAGAGAGGCTTTTTTTGTTAACAACTCGCACTGCAGATTGGTTTGTCAGCCGTGGTTTCTTGGAATGTACCATAGATTCTATTCCAGAACCGAGGAGAACAAGGATAAATCTAACCCGTGGATCAAAGTACTACATTAAAAAACTTCAACCCATTTATAATAGGGTTATCGTTGACTAGGATGAGATTTTATTCTTGGAACTTGAAAAGCGTCGATGTATAATTTTTTATTGTTAATATACAAATATTCATGTGCCTCTTTAGTTGGTTATTGAGTAATACTACAAATTTAGCGACTTGCCAGAAAATTCTTAATCTGGTCAAAATGTCGATTACGGGTGAGGAAAAGCCAAAGAGTGTATTGCTTCTAGCTTCATGAGCGCACAAAATTTTGTCACTGGGATTTGTAATGTGTTAAGGCCTGAAAGAGAATTGAGGTTTAGAATGTTTGATAATAAATCGTGCAAATTTTT

Ace file of the UniGene uagpf_v2_unigene13090

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene346	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetyl-glutamate synthase n=1 Tax=Solanum lycopersicum RepID=C4NFG1_SOLLC	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	amino-acid acetyltransferase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetylglutamate kinase.	EC:2.7.2.8	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Arginine and proline metabolism	00330		79%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Biosynthesis of secondary metabolites	01110		79%
Blast2go	Amino-acid N-acetyltransferase.	EC:2.3.1.1	-	79%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	79%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	79%
Blast2go	acetylglutamate kinase activity	GO:0003991	Molecular Function	79%
Blast2go	acetyl-CoA:L-glutamate N-acetyltransferase activity	GO:0004042	Molecular Function	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Amino-acid N-acetyltransferase (ArgA)	IPR010167	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8S9

Fln msg: your sequence is shorter than subject: 86 - 167

Fln protein: VVTLAVTHGQGDKLLDYMENKAISMGLERLFLLTTRTADWFVSRGFLECTIDSIPEPRRTRINLTRGSKYYIKKLQPIYNRVIVD*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTCAAGGAGATAAATTGCTAGATTACATGGAAAATAAAGCAATATCAATGGGACTAGAGAGGCTTTTTTTGTTAACAACTCGCACTGCAGATTGGTTTGTCAGCCGTGGTTTCTTGGAATGTACCATAGATTCTATTCCAGAACCGAGGAGAACAAGGATAAATCTAACCCGTGGATCAAAGTACTACATTAAAAAACTTCAACCCATTTATAATAGGGTTATCGTTGACTAG___GATGAGATTTTATTCTTGGAACTTGAAAAGCGTCGATGTATAATTTTTTATTGTTAATATACAAATATTCATGTGCCTCTTTAGTTGGTTATTGAGTAATACTACAAATTTAGCGACTTGCCAGAAAATTCTTAATCTGGTCAAAATGTCGATTACGGGTGAGGAAAAGCCAAAGAGTGTATTGCTTCTAGCTTCATGAGCGCACAAAATTTTGTCACTGGGATTTGTAATGTGTTAAGGCCTGAAAGAGAATTGAGGTTTAGAATGTTTGATAATAAATCGTGCAAATTTTT

Fln Alignment:

Contig13090___HGQGDKLLDYMENKAISMGLERLFLLTTRTADWFVSRGFLECTIDSIPEPRRTRINLTRGSKYYIKKLQPIYNRVIVD
D5A8S9________________HGRGDKLLDYIEKKAISMGLERLFLLTTRTADWFVSRGFSECTIDSIPESRRTKINLTRGSKYYIKKLQPIYNRIIVD

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
32	75	25			0.996473
34			75	25	0.996473
35	75	25			0.996473
37	75			25	0.996473
38			25	75	0.996473
40	75	25			0.996473
41	75	25			0.996473
49	75			25	0.996473
50		25	75		0.996473
54		25		75	0.996473
112		85	14		0.993533
113			85	14	0.993533
114		85		14	0.993533
115	85	14			0.993533
116		85	14		0.993533
121		14	85		0.993533
122	85	14			0.993533
129	14			85	0.993533
130		14	85		0.993533
224	90	10			0.90298
225	90			10	0.90298
226	90			10	0.90298
227	90		10		0.90298
228	90		10		0.90298
234	90	10			0.90298
235		90		10	0.90298
237	10	90			0.90298
313		37		62	1.0
462	33		66		1.0
502	75			25	0.996473
503		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain