SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13079

Length: 1239 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13079

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28031	62/63

Source	Descriptions	Term	Type	Identity
AutoFact	nucleosome assembly protein 1-like protein 1 [Oryza sativa]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	nucleosome assembly	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleosome assembly protein (NAP)	IPR002164	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK77

Fln msg: Distance to subject end: 25 aas, your sequence is longer than subject: 326 - 257

Fln protein: MSKQGGSEEQLAPYSMADLGSALPTGSAALSAEDRAGLVNALKDKLQHLAGQQSGFLDSLSPVVKNRVSALQEIQSKHDELEAKFFEERAALEAKYQKLYEPLYAKRFEIVNGINDVESKDESENNASTDENREEEKGVPEFWLTAMKTNEVLSVQITDRDEGALKYLKDIKWCRIDNPKGFKIDFYFDTNPFFKNSVLTKTYHMIDDNEPILERAIGTEIDWYTGKNLTQKLMKKKPKKGAKNAKPVTKTEQCESFFNFFSPPQVPEDDEELDEETAESLQDLMEQDYDIGSTIRDKIIPHAVSWFTGEACQLDELEDVDEEDDF

Protein Length: 327

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATCCGATGAGGGCAAGATGACGCCAAATGAAATGTAATTTCAATGAATTTGATTTCACACGGCAATTTATAATTTTAGTTATCAAAGCCTTCCTCCATCCACATTCGAAGCCTCTCGCAACACTCGTGACCGTCGTGACCTTGGCTGTCAAGCTCAACTCATTGTTCTTGCTTTGTTCCACTCTTTGACGTCGCAATTTCCGCAGCTACTTTAGTAGAAATAAGGGCTTAGG_-_ATGAGCAAGCAAGGAGGCTCTGAAGAACAGCTCGCGCCCTACAGCATGGCAGATCTCGGCTCCGCCCTGCCTACTGGTTCTGCAGCTTTAAGTGCTGAGGACCGTGCTGGTTTGGTCAATGCTTTGAAGGATAAGTTGCAACATCTTGCTGGACAGCAATCTGGTTTTCTTGATTCTCTTTCACCCGTTGTTAAAAACAGAGTGTCAGCTTTGCAAGAGATTCAGAGCAAGCATGATGAACTTGAAGCAAAATTCTTCGAGGAAAGAGCAGCGTTGGAAGCTAAATATCAGAAGTTGTATGAACCACTATATGCAAAGCGTTTTGAAATTGTAAATGGTATCAATGATGTTGAAAGTAAGGACGAGTCTGAGAATAATGCTTCAACTGATGAGAACAGAGAAGAAGAAAAAGGAGTTCCTGAGTTTTGGCTCACTGCAATGAAGACCAACGAAGTGCTTTCTGTACAGATAACAGACCGTGATGAAGGTGCTTTGAAGTATCTGAAGGATATTAAGTGGTGCAGAATTGATAACCCCAAGGGTTTCAAGATTGATTTTTACTTTGACACGAATCCCTTTTTCAAGAATTCTGTGTTGACAAAGACTTACCACATGATTGATGATAATGAACCCATTTTGGAGCGGGCAATAGGGACAGAGATTGATTGGTATACGGGAAAAAATCTAACACAAAAGCTTATGAAGAAGAAGCCAAAGAAAGGAGCCAAAAATGCAAAGCCTGTGACAAAAACAGAACAGTGTGAAAGCTTCTTTAATTTCTTTAGTCCACCACAAGTTCCAGAAGATGACGAAGAACTCGATGAAGAAACTGCTGAGAGCCTCCAGGATCTGATGGAGCAGGACTATGACATTGGTTCAACTATAAGGGATAAAATAATTCCACATGCTGTGTCATGGTTTACTGGTGAGGCTTGCCAGTTGGATGAGTTAGAGGATGTTGATGAAGAAGACGACTTCGC

Fln Alignment:

Contig13079___DKLQHLAGQQSGFLDSLSPVVKNRVSALQEIQSKHDELEAKFFEERAALEAKYQKLYEPLYAKRFEIVNGINDVESKDESENNASTDENREEEKGVPEFWLTAMKTNEVLSVQITDRDEGALKYLK--DIKWCRIDNPKGFKIDFYFDTNPFFKNSVLTKTYHMIDDNEPILERAIGTEIDWYTXXXXXXXXXXXXXXXXXXXXXXVTKTEQCESFFNFFSPPQVPXXXXXXXXXTAESLQDLMEQDYDIGSTIRDKIIPHAVSWFTGEA
A9NK77________________DKSKRSKGEEEEHIDGELVL---SIEKLQEIQDELERVNEEASDKVLEVEQKYNEIRRPVYTKRNEII-------------------------QTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFK-DVKSGYSITFTFRPNPYFDETKLVKVFSFCDDGS---TKITGTTLKWKDGMDVTNGISPEKEGN--------KRSYQEESFFTWFSETQ---------KDTPDGIHD------EVAEIIKEDLWPNPLKYFNSEA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
160			60	20	0.99255
162		60	40		1.0
164	20	20		60	0.99255
166	60	20		20	0.99255
167		80	20		0.995493
168	20	80			0.995493
170			20	80	0.995493
173		60		40	1.0
175			60	40	1.0
177		60	40		1.0
181		60		40	1.0
183		60		40	1.0
184	60	40			1.0
189	46	3		3	1.0
326		94		5	0.998578
328		94	5		0.998578
339		5		94	0.998578
341		94	5		0.998578
346			91	8	1.0
358		5	94		0.9982
359	94		5		0.9982
360			94	5	0.9982
365			94	5	0.9982
374		5		94	0.998397
375	5		94		0.998397
376		5	94		0.998397
699	90	10			0.90298
700	90		10		0.90298
702		10	90		0.90298
703	90		10		0.90298
704	90			10	0.90298
709	90			10	0.90298
710	90			10	0.90298
711		90	10		0.90298
713	90	10			0.90298
714	90			10	0.90298
719	10			90	0.90298
720		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain