SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13038

Length: 560 nt

UniGene Fasta

>uagpf_v2_unigene13038
CGTCGTGACCTTGGCTGTCACTCATCTCTGATTACACCAACATTGCTCGCCATATTAAAAAGGAATTCGACAGTTTTTATGGAGCTGGATGGCAGTGCGTTGTGGGGACGAACTTTGGCTGTTTTTTCACTCATGTTGAAGGCACATGCATCTATTTTTGCATGGAAACGTTGAATTTATTGATGTTCAAAGGAGCTTAATTCATGGTCATCTCTGTAATCACTCTTTGTATTTCTTCTCTTGTGGATGAGTTTGAGAAGAAATGGAATGTGTTGTTTATATGTATAAAATGGATATCAGTTCAGGTCCTTGCAGTTCAGTTCTGGGATTTCACAGGAGAACGCTAGAAACACCGACTTTCAGAGGAGATCATATGTTATGAAGTATATTGTCTAAGATAATGCCCACCCAAAAAGATGAAGTGATATGTATTTACTTCAAGGGTATGTGCCATATCATTTTGTGCAGAGCTAGAGCCATGGAGTAACATCTTCTGCTTAGAAGGTTGTATCTGGATTTTACAATTATCAGAATTCGGATTTATAGTAGAAACAAAAAAA

Ace file of the UniGene uagpf_v2_unigene13038

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6080	118/124

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RHO guanyl-nucleotide exchange factor 11 [Arabidopsis thaliana] gb\|AAF29412.1\|AC022354_11 dynein light chain, putative [Arabidopsis thaliana] gb\|AAG51538.1\|AC037424_3 unknown protein; 73838-74229 [Arabidopsis thaliana] gb\|AAR20740.1\| At1g52250 [Arabidopsi	-	-	2.0e-30	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	cytoplasmic dynein light	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	root hair cell development	GO:0080147	Biological Process	81%
Blast2go	microtubule-based process	GO:0007017	Biological Process	81%
Blast2go	Rho guanyl-nucleotide exchange factor activity	GO:0005089	Molecular Function	81%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	81%
Blast2go	microtubule associated complex	GO:0005875	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dynein light chain, type 1/2	IPR001372	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP31

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 66 - 91

Fln protein: S*PWLSLISDYTNIARHIKKEFDSFYGAGWQCVVGTNFGCFFTHVEGTCIYFCMETLNLLMFKGA*

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGATTACACCAACATTGCTCGCCATATTAAAAAGGAATTCGACAGTTTTTATGGAGCTGGATGGCAGTGCGTTGTGGGGACGAACTTTGGCTGTTTTTTCACTCATGTTGAAGGCACATGCATCTATTTTTGCATGGAAACGTTGAATTTATTGATGTTCAAAGGAGCTTAA___TTCATGGTCATCTCTGTAATCACTCTTTGTATTTCTTCTCTTGTGGATGAGTTTGAGAAGAAATGGAATGTGTTGTTTATATGTATAAAATGGATATCAGTTCAGGTCCTTGCAGTTCAGTTCTGGGATTTCACAGGAGAACGCTAGAAACACCGACTTTCAGAGGAGATCATATGTTATGAAGTATATTGTCTAAGATAATGCCCACCCAAAAAGATGAAGTGATATGTATTTACTTCAAGGGTATGTGCCATATCATTTTGTGCAGAGCTAGAGCCATGGAGTAACATCTTCTGCTTAGAAGGTTGTATCTGGATTTTACAATTATCAGAATTCGGATTTATAGTAGAAACAAAAAAA

Fln Alignment:

Contig13038___ISDYTNIARHIKKEFDSFYGAGWQCVVGTNFGCFFTHVEGTCIYFCMETLNLLMFKGA
B8LP31________________VSDCTSIASHIKKEFDTVYGVGWQCVVGTNFGSFFSHAEGTFIYFCLETLNILMFKGA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
162	46			52	1.0
478		75	25		1.0
543		33		66	0.997452
544	66		33		0.997452
545		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain