SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13002

Length: 571 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13002

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1849	15/18

Source	Descriptions	Term	Type	Identity
AutoFact	DUF810 domain containing protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	Munc13 homology 1	IPR014770	-	-
Sma3	Mammalian uncoordinated homology 13, domain 2	IPR014772	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
58		20		80	0.995493
60	80			20	0.995493
63		20		80	0.995493
64			80	20	0.995493
65			20	20	0.99255
67	20	20		60	0.99255
68		20		80	0.995493
69		20	20	60	0.99255
71		20		80	0.995493
72	20		20	60	0.99255
73		20	80		0.995493
74		20		80	0.995493
76	20			80	0.995493
78			80	20	0.995493
79		20		80	0.995493
81		20		80	0.995493
85	20			80	0.995493
146		20		80	0.995493
157	83		16		0.994512
158	83			16	0.994512
159	83		16		0.994512
161	83	16			0.994512
163		83		16	0.994512
166		7	14	78	0.999974
167		14	7	78	0.999974
169	78	7	14		0.999974
170	78		7	14	0.999974
171	78	14		7	0.999974
172	14		85		0.999981
174		85		14	0.999981
175		21	78		1.0
210	84	10		5	0.999846
213	84			15	1.0
216	89	10			0.999919
217	84	5		10	0.999846
220		89	10		0.999919
225		10	89		0.999919
445		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain