SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12975

Length: 649 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12975

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1888	12/14

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	gdp-mannose pyrophosphorylase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase (GDP).	EC:2.7.7.22	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Fructose and mannose metabolism	00051		90%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Biosynthesis of secondary metabolites	01110		90%
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	90%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	90%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	90%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	90%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	90%
Blast2go	response to ozone	GO:0010193	Biological Process	90%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	90%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	90%
Blast2go	response to heat	GO:0009408	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	mannose-1-phosphate guanylyltransferase (GDP) activity	GO:0008928	Molecular Function	90%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
46		50		50	1.0
52	50	50			1.0
53	50	50			1.0
54			50	50	1.0
60		50	50		1.0
61		50		50	1.0
62	50	50			1.0
64	50	50			1.0
66		50		50	1.0
67	50		50		1.0
75		50		50	1.0
94		20	80		0.995493
96		20		80	0.995493
97	20			80	0.995493
134			80	20	0.995493
176	85	14			0.993533
179	85		14		0.993533
186			14	85	0.993533
187		14	85		0.993533
189		85	14		0.993533
193		14		85	0.993533
194			85	14	0.993533
195		14	85		0.993533
202		18	81		0.999994
210			81	18	0.999994
213		18		81	0.999994
363	88	11			0.923564
365	88	11			0.923564
366			88	11	0.923564
367		11	88		0.923564
368	11			88	0.923564
407			55	44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain