SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12938

Length: 764 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12938

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16609	13/17
SustainPine v2.0	sp_v2.0_unigene24077	4/17

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-CoA-binding domain-containing protein 1 n=1 Tax=Arabidopsis thaliana RepID=ACBP1_ARATH	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	acyl- binding protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	69%
Blast2go	response to cold	GO:0009409	Biological Process	69%
Blast2go	response to lead ion	GO:0010288	Biological Process	69%
Blast2go	lead ion binding	GO:0032791	Molecular Function	69%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	phosphatidic acid binding	GO:0070300	Molecular Function	69%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	glyoxysome	GO:0009514	Cellular Component	69%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA-binding protein, ACBP	IPR000582	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
121		33	66		0.997452
124		33		66	0.997452
134		66	33		0.997452
135	66		33		0.997452
136		33		66	0.997452
137	66			33	0.997452
142		33	66		0.997452
177	75		25		0.996473
178	75			25	0.996473
179	75	25			0.996473
182		75	25		0.996473
185	75	25			0.996473
191	75			25	0.996473
193	75			25	0.996473
194	75	25			0.996473
196	75	25			0.996473
337		33		66	1.0
338			33	66	1.0
343			33	66	1.0
344	33	66			1.0
345		33		66	1.0
348		66		33	1.0
354		20	80		1.0
355	20			80	1.0
358	13	13	66		0.99996
359	80	13			0.999961
360	6	6	66	13	0.99996
361	86	13			0.999973
602		28	71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain