SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12913

Length: 1369 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12913

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4410	58/61

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=11 Tax=Spermatophyta RepID=CAPP_PICAB	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phosphoenolpyruvate carboxylase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	0.0	94%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyruvate metabolism	00620		94%
Blast2go	Methane metabolism	00680		94%
Blast2go	Carbon fixation in photosynthetic organisms	00710		94%
Blast2go	Carbon fixation pathways in prokaryotes	00720		94%
Blast2go	Metabolic pathways	01100		94%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	94%

Source	GOs	Term	Type	Identity
Blast2go	oxaloacetate metabolic process	GO:0006107	Biological Process	94%
Blast2go	carbon fixation	GO:0015977	Biological Process	94%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	94%
Blast2go	photosynthesis	GO:0015979	Biological Process	94%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	94%
Blast2go	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	94%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	94%
Blast2go	cytoplasm	GO:0005737	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNW6

Fln msg: Distance to subject end: 609 aas, your sequence is shorter than subject: 354 - 963

Fln protein: MAPNNLEKMASIDAQMRLLVPGKVSEDDKLIEYDALLLDRFLDILQDVHGEDIREMVQECYERSGEYEGKNDPCKLEELGNVLTSLDPGDSIVVASSFSHMLNLANLAEEVQIAYRRRNKIKRGNFSDENNATTESDIEETFKRLVYQLKKSPAEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLSQLYGKDITPDEKHELDEALLREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTALKSIGINERMPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCSDELRARALQLHSASKKDAKHYNR

Protein Length: 355

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACCTTGGCTGTCACTCAGTGGGCTTTGGTTTTTTACTAATGTTTTGGGACTCGAGTTGCTCGGTCCAGTCTTTTATGCCCCATTAATATCCCTCTGGCTTTGCAAAGACATAGCTTTGAGCATCTTAACCTGGATCTTGAAATAATTTTTGAGTGGCATCATTGATACTTTGAAGAAATTGTGTTATTAAATTTTTGTTGTTGCAGAAGGAAGATCAGAATATTGAGGTTTTGGCAAGGGGGAGCTTCGATTTAGGAGCAGTCTATCGCAAAG_-_ATGGCTCCTAACAACTTGGAGAAGATGGCATCAATTGATGCCCAGATGAGGCTCTTGGTTCCTGGAAAAGTTTCTGAGGATGACAAGTTGATTGAGTACGATGCCCTTCTACTGGATCGGTTCCTTGACATCCTGCAGGACGTGCATGGAGAAGATATCAGGGAGATGGTCCAAGAATGCTATGAGCGTTCTGGTGAATATGAGGGGAAGAATGATCCTTGCAAGCTGGAAGAGTTGGGAAATGTATTAACAAGTCTGGATCCTGGGGATTCGATTGTTGTGGCCAGCTCATTTTCCCACATGCTTAATTTAGCAAACTTAGCAGAAGAAGTTCAGATTGCTTACCGGCGCCGAAATAAAATAAAGAGGGGGAATTTTTCAGATGAAAACAATGCAACTACTGAATCAGACATTGAAGAAACTTTTAAAAGACTTGTATACCAGTTAAAAAAATCCCCGGCAGAGGTGTTTGATGCTCTTAAGAATCAGACAGTTGATTTGGTGTTGACAGCACATCCAACACAGTCAGTCCGCAGGTCATTGCTGCAGAAGCATGCCAGGATTAGAAATTGCTTGTCTCAGTTATATGGGAAAGATATTACCCCTGATGAGAAGCATGAGCTTGATGAAGCTTTGCTAAGAGAGATTCAAGCTGCCTTTCGCACAGATGAAATTCGGCGTACTCCTCCTACTCCACAAGATGAGATGCGAGCAGGAATGAGCTATTTTCATGAAACAATTTGGAAGGGTGTCCCTAAGTTTCTGCGCCGTATTGATACTGCCCTGAAGTCAATTGGGATCAATGAACGAATGCCATATAATGCACCTCTTATACAGTTTTCTTCATGGATGGGAGGTGATCGAGATGGAAATCCTAGGGTAACTCCAGAAGTAACAAGAGATGTTTGCTTACTTGCAAGAATGATGGCAGCTAATTTATATTATTCCCAGATAGAGGATCTTATGTTCGAGTTGTCCATGTGGCGTTGTAGTGATGAGCTGAGAGCACGAGCGCTACAACTGCACAGTGCATCAAAGAAAGATGCAAAGCATTACAATAGAA

Fln Alignment:

Contig12913___MAPNNLEKMASIDAQMRLLVPGKVSEDDKLIEYDALLLDRFLDILQDVHGEDIREMVQECYERSGEYEGKNDPCKLEELGNVLTSLDPGDSIVVASSFSHMLNLANLAEEVQIAYRRRNKIKRGNFSDENNATTESDIEETFKRLVYQLKKSPAEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLSQLYGKDITPDEKHELDEALLREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTALKSIGINERMPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCSDELRARALQLHSASKKDAKHY
B8LNW6________________MARNNLEKMASIDAQMRLLVPGKVSEDDKLIEYDALLLDRFLDILQDLHGEDIREMVQECYERSGEYEGKNDPHKLEELGNVLTSLDPGDSIVVASSFSHMLNLANLAEEVQIAYRRRNKIKRGGFADESNATTESDIEETFKRLVNQLGKSPAEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLSQLYGKDITPDEKQELDEALLREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTALKSIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCSDELRARALQLHSASKKDAKHY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
27		66		33	0.997452
31			66	33	0.997452
39			66	33	0.997452
41	33	66			0.997452
47		66	33		0.997452
188			33	66	1.0
201		66		33	0.997452
298	91		2		0.995912
304	94	5			0.998894
305	91	2		5	0.995912
306		8	91		1.0
944			14	85	0.993533
945	85			14	0.993533
946	85	14			0.993533
948	85			14	0.993533
951		14	85		0.993533
952	85	14			0.993533
957	85		14		0.993533
962		85		14	0.993533
964	14			85	0.993533
965		14		85	0.993533
969	14	85			0.993533
986			71	28	1.0
987	14			85	0.993533
990			14	85	0.993533
1052	77	22			0.999999
1055		22	77		0.999999
1059	22			77	0.999999
1062		77		22	0.999999
1066	77	22			0.999999
1067	77			22	0.999999
1072		22		77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain