SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12904

Length: 734 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12904

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5379	12/14

Source	Descriptions	Term	Type	Identity
AutoFact	ARGONAUTE 1 n=2 Tax=Nicotiana RepID=D6RUV9_TOBAC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	argonaute protein group	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	0.0	82%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
101		57		42	1.0
102			57	42	1.0
113			57	42	1.0
116	42			57	1.0
121		57		42	1.0
122			28	71	1.0
154		18		81	0.999994
156	69	23	7		1.0
158	15	84			0.999986
251	30		69		1.0
259		30		69	1.0
286		69	30		1.0
303	69		30		1.0
311	69		30		1.0
332	27			72	1.0
333	27		72		1.0
347	30		70		1.0
357		72	27		1.0
369		20		80	0.999996
376		22		77	0.999999
384		12		87	0.992554
422	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain