SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12817

Length: 1031 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12817

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2833	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	Deaminase n=3 Tax=Andropogoneae RepID=B6TRX4_MAIZE	-	-	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	55%
Blast2go	adenosine deaminase-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	75%
Blast2go	deaminase activity	GO:0019239	Molecular Function	75%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
54	33			66	0.997452
56	66		33		0.997452
59	33			66	0.997452
64	66			33	0.997452
65		66	33		0.997452
67		33	66		0.997452
68	66			33	0.997452
69	66		33		0.997452
70		25		75	0.996473
71		25	75		0.996473
72	25			75	0.996473
74		25	75		0.996473
76		75	25		0.996473
78	75	25			0.996473
82		75	25		0.996473
83	75		25		0.996473
84	75	25			0.996473
88		75		25	0.996473
136		14		85	0.993533
143	85	14			0.993533
144			85	14	0.993533
145	85			14	0.993533
146		85	14		0.993533
148	85	14			0.993533
150		85		14	0.993533
154		14	85		0.993533
157		14		85	0.993533
158	14	85			0.993533
201		20		73	1.0
204		20		80	1.0
205			20	80	1.0
209	80	20			1.0
213		80	20		1.0
214	80		20		1.0
217	80		20		1.0
218	80			20	1.0
219	80	20			1.0
222		86		13	0.999973
223		13	80	6	0.999961
224	13	6	80		0.999961
464			90	10	0.90298
468	88		11		0.923564
469	88		11		0.923564
470	88	11			0.923564
471	88	11			0.923564
525			33	66	0.997452
612	42		57		1.0
621			42	57	1.0
622	42			57	1.0
624			57	42	1.0
628	42	14			1.0
633		50	12	37	1.0
634			37	62	1.0
635		87	12		0.992554
638	87	12			0.992554
642	90		10		0.90298
649	90	10			0.90298
677	84			15	0.999986
681	83	16			0.999991

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain