SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12802

Length: 694 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12802

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene838	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8B1_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	rna helicase like protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
111		33	66		0.997452
112	66		33		0.997452
114		33	66		0.997452
115	66		33		0.997452
122	66	33			0.997452
125			33	66	0.997452
130	66			33	0.997452
133	66	33			0.997452
291	66	33			0.997452
294		33	66		0.997452
300	66	33			0.997452
305			33	66	0.997452
307	66			33	0.997452
308	66		33		0.997452
309			66	33	0.997452
311	33			66	0.997452
312		33		66	0.997452
322	37	62			1.0
326		33	66		1.0
330	66		33		1.0
332		66	33		1.0
336			66	33	1.0
337			66	33	1.0
339	33			66	1.0
345	33	66			1.0
348	66	33			1.0
517		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain