SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12782

Length: 920 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12782

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7426	22/27
SustainPine v2.0	sp_v2.0_unigene22702	2/27
SustainPine v2.0	sp_v2.0_unigene62527	1/27

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] gb\|ACC84249.1\| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	trna -lysidine synthetase	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	tRNA modification	GO:0006400	Biological Process	59%
Blast2go	translation	GO:0006412	Biological Process	59%
Blast2go	ligase activity, forming carbon-nitrogen bonds	GO:0016879	Molecular Function	59%
Blast2go	ATP binding	GO:0005524	Molecular Function	59%
Blast2go	cytoplasm	GO:0005737	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	Lysidine-tRNA(Ile) synthetase	IPR012094	-	-
Sma3	Lysidine-tRNA(Ile) synthetase, N-terminal	IPR012795	-	-
Sma3	tRNA(Ile)-lysidine/2-thiocytidine synthase	IPR011063	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

SNPs (tot: 82)

Position	A %	C %	G %	T %	Probability
42	66	33			0.997452
43		33	66		0.997452
44		33		66	0.997452
47			33	66	0.997452
51		33	66		0.997452
52	66	33			0.997452
54	66			33	0.997452
55	66		33		0.997452
56	66		33		0.997452
58	66			33	0.997452
60	66			33	0.997452
61	66	33			0.997452
68	33			33	0.997753
72	75	25			0.996473
75		75	25		0.996473
78		75		25	0.996473
79	75		25		0.996473
82	75	25			0.996473
86		25	75		0.996473
87	25	75			0.996473
88		20		80	0.995493
90		80		20	0.995493
92	80		20		0.995493
99	80		20		0.995493
101			80	20	0.995493
103	60			20	0.99255
104	80	20			0.995493
106	80	20			0.995493
199		16	83		0.994512
204	83		16		0.994512
205	83			16	0.994512
207	16		83		0.994512
210			83	16	0.994512
211	83		16		0.994512
213	83	16			0.994512
214	83			16	0.994512
220		16		83	0.994512
221			83	16	0.994512
222		16	83		0.994512
239		16	83		0.994512
244	85			14	0.993533
245		14		85	0.993533
248			14	85	0.993533
249	14			85	0.993533
257	85		14		0.993533
258		14	85		0.993533
259	85			14	0.993533
263	14			85	0.993533
269	14	85			0.993533
276		28	71		1.0
379	77	22			0.999999
380	77		22		0.999999
384			77	22	0.999999
385		77	22		0.999999
387	77	22			0.999999
389	77			22	0.999999
390	77			22	0.999999
391			77	22	0.999999
392	77		22		0.999999
393	77	22			0.999999
397		22		77	0.999999
400			77	22	0.999999
401		22	77		0.999999
402	22		77		0.999999
405			12	87	0.999964
408	88		11		0.999952
415		12	87		0.999964
464	45	27	18		1.0
487		20	80		1.0
493	85			14	0.999981
533	85		14		0.999981
544			85	14	0.999981
574		11	88		0.999937
575	88		11		0.999937
576	88		11		0.999937
586		88	11		0.999937
588		83	16		1.0
595		22		77	1.0
649			87	12	0.999964
660	21		78		1.0
701			80	20	0.999996
742	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain