SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12727

Length: 1608 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12727

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21957	33/35

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 12 [Arabidopsis thaliana] sp\|P69781.1\|GAT12_ARATH RecName: Full=GATA transcription factor 12 dbj\|BAH30596.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED93492.1\| GATA transcription factor 12 [Arabidopsis thaliana]	-	-	9.99995e-41	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	gata transcription factor	-	-	0.0	50%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Transcription factor, GATA, plant	IPR016679	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB3

Fln msg: your sequence is longer than subject: 366 - 321

Fln protein: METGTGNGTSPFATDKMKFEAVTKFETGITGDFFDQFDDLLDFSNEEIGAPIGESSINCPKDGILGGNSVTEAVSSNFRVDESDSGKLCIPSDDLAELEWLSSFDPFLEHVPTYPYEPEPTYPYEPDFGAEVKEKYEEGQNSDKFRSPSPTSVLGQNSDKFRSLSPTSVLESNSGKISTFSPEITVPGKARSKRSRAPV*KWPPRIISPASSDGLLENGPNSFSSDSGHFVTKPVEPEPLKKIIKTNHWDKKKGQDSIQVRKCLHCGVQKTPQWRAGPKGPKTLCNACGVRYKSGRLLPEYRPAASPTFSVMKHSNSHKKVLEMRRQRELMMQEQTSQAKQAYLGSGDDCLVNIGEDYSGSDFLP*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGCTTTTTTTATGAGGCACTTGTCTGGGGTCGATATTTTAAGTGGCAGGATAGTTCCTCTGCATGCAATGCCGCTGACACTGTTTGCTTCTTCGCAAAGCTGATTATTGCCTTCGTATTCACTAGTCTTCTTTTGGGTTTCCCTTGTGCCCACAAACAGTTCGCAAGGAAAGACCAGAGGCAGAATTCGGTTTCATTCAAAGAAACAACAGTTGAGT_-_ATGGAAACTGGTACAGGCAATGGAACATCTCCCTTTGCAACAGATAAAATGAAGTTTGAGGCAGTGACCAAGTTCGAAACAGGTATCACGGGGGACTTTTTTGACCAATTTGATGACCTGCTGGACTTTTCCAATGAAGAAATTGGAGCACCCATTGGAGAAAGCAGTATCAACTGTCCCAAGGATGGCATTTTAGGAGGCAACTCTGTGACAGAAGCTGTGAGTTCCAATTTCAGAGTAGACGAGAGCGACTCTGGAAAACTGTGTATTCCTAGCGATGATTTGGCAGAGCTAGAATGGCTTTCAAGCTTTGACCCATTCCTAGAACATGTACCGACATATCCTTATGAACCTGAACCGACATATCCTTATGAACCTGATTTTGGAGCTGAAGTCAAGGAAAAATATGAAGAAGGGCAGAATTCTGATAAGTTCAGAAGCCCGAGTCCTACATCGGTACTGGGGCAGAATTCTGATAAATTCAGAAGCCTGAGTCCTACATCGGTTCTAGAAAGCAACTCGGGGAAAATTTCAACTTTTAGTCCAGAAATCACTGTACCAGGAAAAGCAAGAAGCAAGAGGTCTAGAGCCCCAGTTTGAAAATGGCCTCCTAGGATTATTTCCCCTGCATCTTCAGATGGGTTATTGGAGAATGGTCCAAACTCTTTCAGCAGTGATTCAGGACACTTCGTTACCAAGCCAGTGGAACCTGAACCCCTGAAGAAAATCATCAAGACAAACCACTGGGATAAGAAGAAGGGGCAGGATTCAATTCAGGTCAGGAAATGCTTGCACTGTGGAGTACAGAAAACCCCACAGTGGAGGGCTGGGCCCAAGGGTCCTAAGACACTATGTAATGCCTGCGGTGTAAGATACAAATCTGGTAGGCTTCTGCCCGAATACAGACCTGCTGCAAGTCCTACATTTTCAGTTATGAAACACTCGAACTCCCACAAGAAAGTTCTTGAAATGAGGCGTCAAAGGGAGCTGATGATGCAGGAACAGACCTCCCAAGCAAAACAAGCATATCTGGGATCCGGAGATGATTGCTTGGTGAACATTGGTGAAGATTATAGTGGTTCTGATTTTTTACCATGA___CAGAAGAGGGGTAAAAGTGCAATTTTGTATATAGCAGAGGCTCAAATCCTATTAGAGGCATATCCACAGATTGGTCCCATGTCCTTTAATGAAAAACATTCTGCATTTCGATTTCACAGTCTAGAGTTCATGATTCCAGTGGATGAGTTACAATACATTGCCTCTGTTCTATATACAAAAAGCATGGAAGGGTATGGAAGGGACATCATGGTTGTTTATTGTAGACAGAGAGCATGTCATTTTTATTGAGGGGAGGGATTGAGTTCC

Fln Alignment:

Contig12727___SNEEIGAPIG------------ESSINCPKDGILGGNSVTEAVSSNFRVDESD------------------SGKLCIPSDDLAELEWLSSFDPFLEHVXXXXXXXXXXXXXXXDFGAEVKEKYEEGQNSDKFRSPSPTSVLGQNSDKFRSLSPTSVLESNSGKISTFSPEITVPGKARSKRSRAPV*KWPPRIISPASSDGLLENGPNSFSSDSGHFVTKPVEPEPLKKIIKTNHWDKKKGQDSIQVRKCLHCGVQKTPQWRAGPKGPKTLCNACGVRYKSGRLLPEYRPAASPTFSVMKHSNSHKKVLEMRRQR----ELMMQEQTS
B8LKB3________________SCEDIGAPTGGAGCSHGEKSHPESAFSEPNSGDSSVTETEAAAAAAATCDEVSRPAPNVVEVDGSGGVCLFSGELCVPADALEELEWLSTF--------------------VDDSFVAVPELVVP---VDSVREPSER----EESQRKQS----NALLAGAGRT-------WVLGRARSKRSRCVN---PAVFVSVALKNDEPRTGRKA--AMKGSVCVAP--PAAVKKAKKGCQSRSGGGQES---RRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPALSPTFSSGLHSNCHRRVVEIRRQRIDQQQPLSQQETS

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
33		33		66	1.0
34	33		33	33	0.997753
40	50			50	1.0
42	50		50		1.0
49			50	50	1.0
54		50	50		1.0
55	50		50		1.0
56		50	50		1.0
59	50		50		1.0
101		83		16	0.999991
102		16		83	0.999991
104	83			16	0.999991
105		83	16		0.999991
109		16	83		0.999991
112			16	83	0.999991
119	16			83	0.999991
121			83	16	0.999991
371		10		90	0.90298
374			10	90	0.90298
375		90	10		0.90298
377	90			10	0.90298
378	90		10		0.90298
380		10	90		0.90298
382	87			12	0.992554
383		12	87		0.992554
410	87	12			0.992554
413	87		12		0.992554
415		87	12		0.992554
417	87	12			0.992554
422		87	12		0.992554
423		87	12		0.992554
426	87			12	0.992554
428			87	12	0.992554
429	87	12			0.992554
430	12			87	0.992554
431		12	87		0.992554
432			87	12	0.992554
561		75		25	0.996473
563	75		25		0.996473
566	25			75	0.996473
570	75			25	0.996473
573	75		25		0.996473
582	25	50		25	0.995533
583		25	75		0.996473
584	75			25	0.996473
728	66	33			0.997452
729			33	66	0.997452
732	66		33		0.997452
733			66	33	0.997452
734	66		33		0.997452
736		33	66		0.997452
738		66		33	0.997452
741	66		33		0.997452
742		33	66		0.997452
744		66	33		0.997452
745		66		33	0.997452
746		33		66	0.997452
843	50	50			1.0
847			50	50	1.0
852	50	50			1.0
853	50	50			1.0
855			50	50	1.0
866		50	50		1.0
867	33	33		33	1.0
868		33	33	33	1.0
869	33			66	1.0
871	88	11			0.923564
872		22	11	66	0.999999
873		22		77	0.999999
874			11	88	0.923564
875	11	66		22	0.999999
876		77	22		0.999999
877		77	22		0.999999
878		88		11	0.923564
882		88	11		0.923564
883	88	11			0.923564
886		88	11		0.923564
887	22			77	0.999999
888		12		25	1.0
889	12			87	0.992554
891	87			12	0.992554
892		12	87		0.992554
1113		20		80	0.995493
1117		80	20		0.995493
1122		20	80		0.995493
1123			80	20	0.995493
1126			20	80	0.995493
1127	80	20			0.995493
1128	80			20	0.995493
1130	80			20	0.995493
1131		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain