SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12724

Length: 1331 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12724

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4266	73/76

Source	Descriptions	Term	Type	Identity
AutoFact	minor allergen [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	minor allergen	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	82%
Blast2go	FMN binding	GO:0010181	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	0.0	-
Sma3	Flavoprotein WrbA	IPR010089	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMW0

Fln msg:

Fln protein: MGKGGGCVPSSSRKRLPGTSSAKKEDPKADVPREITNDISEKPVEEALGHEDTAPVVEDTASLPPSAPRKLRIFIVFYSMYGHVEALAKKMKEGIDVIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELAGADGLLFGFPTRYGAMAAQMKAFFDSTGNLWREQTLAGKPAGFFVSTGTQGGGQETTAWTAITQLSHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQASSVELALAEHQGKYMAAIVKRLVKA*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGAGGCTTCATTGGAAATGGCGTCCAGCTGGGGAGGGCAGTGCCAGTCTGCATAGAACAATTCTGATCTGTCGTGATCTTGAGTTGTCTTTCATCTTTGTAAAGGTACAGTCTCTGATTGGGAACTGTGGAGGTGGAATGTAATAAGGAATC_-_ATGGGCAAAGGAGGGGGTTGTGTTCCAAGTTCATCTAGGAAGCGTTTGCCCGGTACCAGTTCCGCTAAGAAGGAAGATCCCAAGGCTGATGTCCCTCGAGAAATTACTAATGACATTTCAGAGAAGCCCGTTGAAGAAGCATTAGGCCATGAGGATACTGCTCCCGTAGTGGAGGATACAGCTTCCTTACCCCCTAGTGCCCCTCGGAAACTCAGAATTTTCATAGTGTTCTATTCCATGTATGGTCATGTGGAAGCATTGGCAAAGAAGATGAAGGAGGGAATTGATGTAATCGAGGGAGTGGAGGGAACTTTGTACAGGGTCCCTGAGATACTCTCGGCCCAGGTTCTGGAGCAGATGCGTGCGCCTCCCAAGGATGAGTCTATTCCTGTCATAACCGCTGAAGAGCTGGCTGGAGCAGATGGGCTGTTATTTGGGTTTCCCACTAGGTATGGTGCAATGGCAGCTCAGATGAAGGCATTCTTTGATTCCACGGGAAATTTATGGAGGGAGCAGACTCTAGCAGGGAAGCCTGCAGGTTTTTTTGTCAGTACCGGTACACAGGGGGGAGGTCAGGAGACTACAGCTTGGACTGCTATTACTCAGTTGTCTCATCATGGAATGCTATTTGTTCCAATTGGCTATACTTTTGGGGCCGGAATGTTTAAAATGGATGAAATTCGTGGTGGTTCACCATATGGTGCAGGGGTTTATGCAGGTGATGGCACAAGACAAGCAAGTAGCGTGGAGCTTGCTCTTGCAGAGCATCAGGGGAAGTACATGGCTGCAATAGTCAAAAGACTTGTTAAAGCTTGA___TTCTTTTCTATGGGCTAGAAAAGGAACTGATTTTTTTATGACTCTGCTTTAAATCTCTTTGAAGTTAGCATATTCGTCTAAAAGTGGTGTGTTCTTTATGATAGGATCTCTTTCTATCATCTGTTAGTGTGTCTCATATATTGCTTTTTGAGAGTAGTTTTTATTTCATAGATTTTTATGTCAGGCATTATTTATGAAGTTTACCACCTTTGTTATTCCAGCCTATTTGTCATCGATTAAATGTATATTGTTTACATTCAATATTGTAATAAAATCTCTCCCGCTCTCTCTCTTATGATTTCACTTACATGTATCAGAATCATTGCATCGACACAGCC

Fln Alignment:

Contig12724___VPSSSRKRLPGTSSAKKEDPKADVPREITNDISEKPVEEALGHEDTAPVVEDTAS-LPPSAPRKLRIFIVFYSMYGHVEALAKKMKEGIDVIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELAGADGLLFGFPTRYGAMAAQMKAFFDSTGNLWREQTLAGKPAGFFVSXXXXXXXXXXXAWTAITQLSHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQASSVELALAEHQGKYMAAIVKRLVKA
B8LMW0________________VPSSSRKRLPGVGSSHKEDPNADLPQENNNDISEKPVEEALGHEDPPPILEDAASSLPLSSPRKLRIFVVFYSMYGHVEALAKKMKEGIDAIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELTAADGLLFGFPTRYGAMAAQMKAFFDSTGKLWREQSLAGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQPSSVELALAEHQGKYMAAVVNRLVKA

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
100	33	33	33		0.997753
101	66		33		0.997452
102		33		66	0.997452
103	33	66			0.997452
104			33	66	0.997452
108	33	33			0.997753
109		33	66		0.997452
110	33	33		33	0.997753
111	33			66	0.997452
113			33	66	0.997452
115	33			66	0.997452
116		33	33	33	0.997753
119	33	66			0.997452
124		33		66	0.997452
125	33			66	0.997452
178	57	14	14	14	0.979185
179	71		28		1.0
180	14	14		71	0.984337
182	57	14	14	14	0.979185
184			71	14	0.984337
186	14	14	71		0.984337
187		85		14	0.993533
188	57	14	14		0.979185
189	57			42	1.0
190	57	14	14	14	0.979185
191	14		71	14	0.984337
192		28	71		1.0
193	71	14		14	0.984337
194		28	57	14	1.0
195	14		71	14	0.984337
196		14	71	14	0.984337
197	14	14	71		0.984337
198	14		85		0.993533
199		14		85	0.993533
486	91	8			0.999807
613	88			11	0.923564
614		12		87	0.992554
615			14	85	0.993533
616		14		85	0.993533
700		85		14	0.993533
904			14	85	0.999981
906	85	14			0.999981
909			85	14	0.999981
1290	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain