SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12655

Length: 646 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12655

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6425	21/24

Source	Descriptions	Term	Type	Identity
AutoFact	reticulon-like protein B21 [Arabidopsis thaliana] sp\|Q56X72.2\|RTNLS_ARATH RecName: Full=Reticulon-like protein B21; Short=AtRTNLB21 gb\|AED96983.1\| reticulon-like protein B21 [Arabidopsis thaliana]	-	-	38%
FL-Next	sp=Reticulon-like protein B21; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	62%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
57	85		14		0.993533
58			85	14	0.993533
60		85	14		0.993533
61		85		14	0.993533
64		14	85		0.993533
65		14		85	0.993533
70		14	85		0.993533
71			85	14	0.993533
72	68	25	6		1.0
74		76		23	1.0
75	76	23			1.0
76		5	23	70	1.0
78		5	23	70	1.0
80		23		70	1.0
81		23		70	1.0
85	76		23		1.0
86		23		76	1.0
91	5		76	11	0.999894
95	11			88	0.999952
201	88	11			0.999937
202			11	88	0.999937
204	88	11			0.999937
206	88			11	0.999937
208	11			88	0.999937
209		11		88	0.999937
210	88	11			0.999937
211	88			11	0.999937
214	88	11			0.999937
215	88			11	0.999937
496	66		33		1.0
539		83		16	0.994512
541	83			16	0.994512
542	83	16			0.994512
543			16	83	0.994512
544	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain