SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12601

Length: 245 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene12601
CGTCGTGACCTTGGCTGTCACTCATTATTTCTTATGGTCGTCTTTTCATTTCGAATCCTGATCTTCCCCTCAGATTCGCGCTGGGAACGCGGAGGTTGAACAAGTACGATAGATCTACCTTTTATACTTGGGATCAGGTTGTGGGATATACAGATTACCGTTTTCTTCACGATCACAGTGAAGATGAAAATGTGGCTTCGATGTACGGTACACTAAGATCTGCTCTGTGATACCGCAAGGCACAC

Ace file of the UniGene uagpf_v2_unigene12601 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9869	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxo-phytodienoic acid reductase n=1 Tax=Zea mays RepID=Q49HE1_MAIZE	-	-	4.0e-14	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	12-oxophytodienoate reductase	-	-	1.3886e-14	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	1.3886e-14	75%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.3886e-14	75%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.3886e-14	75%
Blast2go	FMN binding	GO:0010181	Molecular Function	1.3886e-14	75%

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 76 - 376

Fln protein: S*PWLSLIISYGRLFISNPDLPLRFALGTRRLNKYDRSTFYTWDQVVGYTDYRFLHDHSEDENVASMYGTLRSAL*

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTCTTATGGTCGTCTTTTCATTTCGAATCCTGATCTTCCCCTCAGATTCGCGCTGGGAACGCGGAGGTTGAACAAGTACGATAGATCTACCTTTTATACTTGGGATCAGGTTGTGGGATATACAGATTACCGTTTTCTTCACGATCACAGTGAAGATGAAAATGTGGCTTCGATGTACGGTACACTAAGATCTGCTCTGTGA___TACCGCAAGGCACAC

Fln Alignment:

Contig12601___IISYGRLFISNPDLPLRFALGTRRLNKYDRSTFYTWDQVVGYTDYRFL
A9P127________________LVVYGRIFLANPDLPKRFELNAP-LNKYDRNTFYSPDPVVGYTDYPFL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
79	77	22			0.999999
131		10	90		0.90298
133			10	90	0.90298
135		10		90	0.90298
137	10			90	0.90298
138		90	10		0.90298
143			10	90	0.90298
144	10			90	0.90298
201	88			11	0.923564
202	88		11		0.923564
207	11		88		0.923564
208	88		11		0.923564
214	88		11		0.923564
216	87			12	0.992554
217	87	12			0.992554
219		12		87	0.992554
220	75		12		0.975346
222		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain