SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12542

Length: 572 nt

UniGene Fasta

>uagpf_v2_unigene12542
CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCATTCTTACTTTTCAGCAAAGAAACTCGGAAGAAGTTAGTGCAGGAAAGACCAGGCATCAACAACACAACCATTAATGCCCTCATTTCTATGAAGTGGAAGGAACTGGACACAGCAGAGAAGCAAAAATGGGCAGATGAGGCCGCAGTTGCCATGATGCAATACAAGAAGGAGGTGGAAGAATATAATAAATCACATTTGAAGGAGCCGTCGTGACCTTGGCTGTCACTCAATCTCCTTCGACCGTGACGAAATGAAATTGGATGGATCTCTTCCCGCTCCAATTACCAACTGATAAATGAATGCTCATTCATTTCAATTCACTGTTTTGTGAAAGGTTCCTGACGGCTTTAGATCCAGGCAATAGGCTTAGGCATGTTCAACCGTATTAGTTGAATACTTTGTAATCGTCATTGATGGATGCCTCAAACTGATATTCTTGGCTATAAATGCCTGTTCTGGCTGCTTTTCCTGTATTTCCTGAATATGGCTATACTTTTACAGTCAAATAAAATACAGCAAGTCTGGATTGGCAGCAC

Ace file of the UniGene uagpf_v2_unigene12542

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9183	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCQ0_RICCO	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	high mobility group family	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000135	-	0.0	-
Sma3		IPR000910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACA0

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 24 aas, your sequence is shorter than subject: 83 - 482

Fln protein: RRDLRRDLGCHSFLLFSKETRKKLVQERPGINNTTINALISMKWKELDTAEKQKWADEAAVAMMQYKKEVEEYNKSHLKEPS*

Protein Length: 84

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCATTCTTACTTTTCAGCAAAGAAACTCGGAAGAAGTTAGTGCAGGAAAGACCAGGCATCAACAACACAACCATTAATGCCCTCATTTCTATGAAGTGGAAGGAACTGGACACAGCAGAGAAGCAAAAATGGGCAGATGAGGCCGCAGTTGCCATGATGCAATACAAGAAGGAGGTGGAAGAATATAATAAATCACATTTGAAGGAGCCGTCGTGA___CCTTGGCTGTCACTCAATCTCCTTCGACCGTGACGAAATGAAATTGGATGGATCTCTTCCCGCTCCAATTACCAACTGATAAATGAATGCTCATTCATTTCAATTCACTGTTTTGTGAAAGGTTCCTGACGGCTTTAGATCCAGGCAATAGGCTTAGGCATGTTCAACCGTATTAGTTGAATACTTTGTAATCGTCATTGATGGATGCCTCAAACTGATATTCTTGGCTATAAATGCCTGTTCTGGCTGCTTTTCCTGTATTTCCTGAATATGGCTATACTTTTACAGTCAAATAAAATACAGCAAGTCTGGATTGGCAGCAC

Fln Alignment:

Contig12542___SFLLFSKETRKKLVQERPGINNTTINALISMKWKELDTAEKQKWADEAAVAMMQYKKEVEEYNKSHLKE
D5ACA0________________SFLLFSKETRKKLVQERPGVNNTTINALISLKWKDLGTAEKQKWVDEAAGAMVQYKKEVEEYNKLHVKE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
13		66	33		0.997452
15		33		66	0.997452
16		66		33	0.997452
19		33	66		0.997452
24	33			66	0.997452
25	33			66	0.997452
26	33		66		0.997452
29		33		66	0.997452
30		33	66		0.997452
31		33		66	0.997452
245	40	60			1.0
247		20		60	0.99255
248	20	80			0.995493
249	40		60		1.0
250	20	20		60	0.99255
251	20	20	60		0.99255
255	40	60			1.0
256	40			60	1.0
257	40			60	1.0
258		40	60		1.0
262	40		60		1.0
263	40			60	1.0
266	40	60			1.0
267			40	60	1.0
268	40	60			1.0
269	60	40			1.0
279	20		80		0.995493
280	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain