SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12510

Length: 878 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12510

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7594	33/34

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Vitis vinifera RepID=UPI000198426A	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	protein binding	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	85%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
209	20		80		0.995493
210		20	80		0.995493
211	80			20	0.995493
270		10		90	0.90298
271			10	90	0.90298
273		10	90		0.90298
274		90	10		0.90298
276	90		10		0.90298
277	10			90	0.90298
278	90	10			0.90298
285	90			10	0.90298
286			10	90	0.90298
288		10	90		0.90298
289	10	90			0.90298
293		10		90	0.90298
294	10		90		0.90298
296		30		70	1.0
515			15	84	0.999986
563		11		88	0.923564
564			11	88	0.923564
566		11		88	0.923564
574			11	88	0.923564
577	88			11	0.923564
578	88		11		0.923564
583	86			13	0.999973
767	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain