SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12400

Length: 534 nt

UniGene Fasta

>uagpf_v2_unigene12400
CGTCGTGACCTTGGCTGTCACTCAATCGAAGCCCCTTTCTGAGAGCAACAGGAGCGTCGTGACCTTGGCTGTCACTGTTTTGGTTTTTCTTTACATGGGATCTACTTTGATTCCCAATATTTGGGTAGCTTTTCAGTTCACAGGAGCAACCACAGGTCTATCTTTAGGTTTCATATTTCCTGCTTTGATAGCCCTGAGGTCTCACCCCAACCAACGAGAGGAAAGCTTAGGATTAAGGAAGAAGATTCTCCCGTGGGCTATGCTTGTCATGGCATTGGTTGTGAGCATTATAGGAGTTCTTGGAAATCTTTTAAATCTTACCACTGGAAATAACTAAATATATTCTAGAAGTGGCGCTATGTTGGAAAGCGCCTTATTCTTATAATGTTATATCTCATCAGCCTAATTTTTTTCAAGGCTTGCTGATTCAGACAGGAGAACTGAAAAGCACTTTGTTATTTATCCATGCACATAATTGAGCATACAGGCAAGAACACTTGAATATGGGATGTAGACACAGTCTAATTCCATGAT

Ace file of the UniGene uagpf_v2_unigene12400

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7618	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb\|AAF27127.1\|AC018849_15 hypothetical protein; 45530-44061 [Arabidopsis thaliana] gb\|AAL16241.1\|AF428472_1 At1g80510/T21F11_16 [Arabidopsis thaliana] gb\|AAN31090.1\| At1g80510/T21F11	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	amino acid transporter	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	74%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	74%
Blast2go	integral to membrane	GO:0016021	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg: your sequence is shorter than subject: 112 - 456

Fln protein: VVTLAVTQSKPLSESNRSVVTLAVTVLVFLYMGSTLIPNIWVAFQFTGATTGLSLGFIFPALIALRSHPNQREESLGLRKKILPWAMLVMALVVSIIGVLGNLLNLTTGNN*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGAAGCCCCTTTCTGAGAGCAACAGGAGCGTCGTGACCTTGGCTGTCACTGTTTTGGTTTTTCTTTACATGGGATCTACTTTGATTCCCAATATTTGGGTAGCTTTTCAGTTCACAGGAGCAACCACAGGTCTATCTTTAGGTTTCATATTTCCTGCTTTGATAGCCCTGAGGTCTCACCCCAACCAACGAGAGGAAAGCTTAGGATTAAGGAAGAAGATTCTCCCGTGGGCTATGCTTGTCATGGCATTGGTTGTGAGCATTATAGGAGTTCTTGGAAATCTTTTAAATCTTACCACTGGAAATAACTAA___ATATATTCTAGAAGTGGCGCTATGTTGGAAAGCGCCTTATTCTTATAATGTTATATCTCATCAGCCTAATTTTTTTCAAGGCTTGCTGATTCAGACAGGAGAACTGAAAAGCACTTTGTTATTTATCCATGCACATAATTGAGCATACAGGCAAGAACACTTGAATATGGGATGTAGACACAGTCTAATTCCATGAT

Fln Alignment:

Contig12400___LYMGSTLIPNIWVAFQFTGATTGLSLGFIFPALIALRSHPNQREESLGLRKKI-LPWAMLVMALVVSIIGV
D5ACG6________________VFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRD-----TNGISTKKDIYLSLFMIFLAVVSSSIAI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
55		87	12		0.992554
56			87	12	0.992554
58		87		12	0.992554
61		12	87		0.992554
63		87		12	0.992554
68	12		87		0.992554
71	12		87		0.992554
110	90	10			0.90298
114		90	10		0.90298
115		90		10	0.90298
116	90		10		0.90298
119	90	10			0.90298
120		10		90	0.90298
125		10	90		0.90298
127	90		10		0.90298
128			90	10	0.90298
130	10			90	0.90298
131		10		90	0.90298
133		10		90	0.90298
134	10	90			0.90298
366	87		12		0.999964
405	25			75	1.0
426	50		50		1.0
458			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain