SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12372

Length: 2275 nt

UniGene Fasta

>uagpf_v2_unigene12372
CGTCGTGACCTTGGCTGTCACTCAGGCTTCATCGTACGTTCTCCAACCTCCATTTTATCGTCGTGACCTTGGCTGTCACTCAGTCACGAAACCCTCGCGTGGTGCATAACCTTTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAAATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGCAAGTAGGTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCAAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCCTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGAGTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTCCATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAACGTTTTTGCAATAGAGAAAATCTTGCGAAAATAAATAAAACAGAATATAATATGTAATATTGTGGCACATTTTTGCGATTGAGAAAATTTTGCGAAAATTTATTTAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCTAATGTCTTCATTCTGTTTAGGATCAACATTGG

Ace file of the UniGene uagpf_v2_unigene12372

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26705	132/139
SustainPine v2.0	sp_v2.0_unigene64416	4/139

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucomutase [Bambusa oldhamii]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	phosphoglucomutase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	90%
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Galactose metabolism	00052	90%
Blast2go	Purine metabolism	00230	90%
Blast2go	Starch and sucrose metabolism	00500	90%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	gametophyte development	GO:0048229	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	phosphoglucomutase activity	GO:0004614	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	cytosolic part	GO:0044445	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	-
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Alpha-D-phosphohexomutase superfamily	IPR005841	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR0

Fln msg:

Fln protein: MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLGK*

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTCATCGTACGTTCTCCAACCTCCATTTTATCGTCGTGACCTTGGCTGTCACTCAGTCACGAAACCCTCGCGTGGTGCATAACCTTTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAA_-_ATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGCAAGTAG___GTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCAAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCCTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGAGTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTCCATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAACGTTTTTGCAATAGAGAAAATCTTGCGAAAATAAATAAAACAGAATATAATATGTAATATTGTGGCACATTTTTGCGATTGAGAAAATTTTGCGAAAATTTATTTAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCTAATGTCTTCATTCTGTTTAGGATCAACATTGG

Fln Alignment:

Contig12372___MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLG
B8LKR0________________MVIFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSTIVVSGDGRYFSEEAIQIIIKMAAANGVRRVWVGQNGLLSTPAVSAVIRNRIGADGEKASGSFILTASHNAGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFAVDVFDPTEDYVKLMKIIFDFEAIQKLLTCPKFTFCYDALHGVAGIYAKRIFVEELSASESSLLNCTPKDDFGGGHPDPNLTYAKELVARMGLGKQAPGSEPPEFGAAADGDADRNMILG

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
59	20	80			1.0
60	20		80		1.0
61		20		80	1.0
63		20	80		1.0
66	80	20			1.0
72		20	80		1.0
73			80	20	1.0
76		20	80		1.0
77	20			80	1.0
78		80	20		1.0
80	20	80			1.0
83	80	20			1.0
84		20	13		1.0
90			91	8	0.999766
221		94	5		0.998397
226	5		94		0.998397
231	94			5	0.998397
234	94	5			0.998397
235	94			5	0.998397
237	94			5	0.998397
238	94	5			0.998397
239	5		94		0.998397
240		5	94		0.998397
256	92		5		0.991359
257	94			5	0.997984
259	94			5	0.997984
262	94	5			0.997984
265	94		5		0.9982
268			5	94	0.9982
269			94	5	0.9982
273	94	5			0.9982
332		7		92	0.999999
335		5		95	0.997749
338	5	95			0.997749
339		5		95	0.997749
342			95	5	0.997749
346	94	5			0.997984
349			94	5	0.997984
352			94	5	0.997984
401	88		3		0.999079
442		8		91	0.999766
443			8	91	0.999766
446	91		8		0.999766
447	91			8	0.999766
448		91	8		0.999766
453			91	8	0.999766
454		91	8		0.999766
455	91		8		0.999766
456		8	91		0.999766
458			8	91	0.999766
464	91			8	0.999766
465		8	91		0.999766
466	8			91	0.999807
517	7	7		69	0.999985
580	88			11	0.923564
633	90		10		0.90298
634	90			10	0.90298
635	90		10		0.90298
638	90	10			0.90298
639	90			10	0.90298
641	90		10		0.90298
642	90	10			0.90298
643	90			10	0.90298
645		10	90		0.90298
647		10	90		0.90298
858		6	75	18	1.0
860			25	75	1.0
861			80	20	1.0
863	26		73		1.0
864	73	20		6	1.0
865	6	20		73	1.0
866	73			26	1.0
868	73		20	6	1.0
869			30	69	1.0
870		33	66		1.0
871		63		27	1.0
872		72	27		1.0
873	66			33	1.0
874	66	33			1.0
876	66	33			1.0
877			62	37	1.0
878		37	62		1.0
880		10		90	0.90298
881	10			90	0.90298
1562		14	85		0.999981
1563		85		14	0.999981
1625			10	90	0.90298
1626			90	10	0.90298
1630		10		90	0.90298
1675		12		87	0.992554
1676			14	85	0.993533
1679		85	14		0.993533
1680	85			14	0.993533
1681	85		14		0.993533
1686		85		14	0.993533
1687	85			14	0.993533
1690		14	85		0.993533
1696			85	14	0.993533
1910	91		8		0.999766
1913	91			8	0.999766
1915	8			91	0.999766
1916		8		91	0.999766
1917	92	7			0.999664
1919	92			7	0.999664
1922	92	7			0.999664
1923	92			7	0.999664
1924	92		7		0.999664
1928		7		92	0.999664
2129			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain