SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12331

Length: 547 nt

UniGene Fasta

>uagpf_v2_unigene12331
CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATGAGGAGCGACTGAACAGACATAGAGTCTTTTACCCTTCTTTGAAGTCAATTTCGTCGTGACCTTGGCTGTCACAAGCATGGGGTGTTGGTCTTATCAATCGTTGTGAGCTAGGTCAAGGACTGGAATATTTCTTTGATCTGCTGTAATTTCTCTAAATTATCTTGTAGTAGCGGAATGAAAGTTCTCCCTAACTTATTTGAGTTCTGTCATTTGTTGTTAAATTTTACACCTAGGCAAATTAGGGGTGAGGAGCACGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAAGAGGTTCTGCAGTTTGTCTCAAATGACTTGTTTTGAGTAACTTTTGAATAATGCAGCTAAATTCAGGCCAACAAAGGAATTGATCCGTCATGAGAAGGAATAAGACAATGAGCTATTTGTAATGGTCATATTTCAAAAGAATAGCCCTACAAGGATTAAGCTAAAGCTCAGGAATTTGCGCAATGATTAATATGGAATTTACGGCTGTTTACAGGAT

Ace file of the UniGene uagpf_v2_unigene12331

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9799	9/12
SustainPine v2.0	sp_v2.0_unigene64781	3/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 18 protein [Arabidopsis thaliana] emb\|CAB80913.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE81972.1\| glycosyl hydrolase family 18 protein [Arabidopsis thaliana]	-	-	2.0e-09	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	chitinase domain-containing protein 1-like	-	-	4.68461e-20	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	4.68461e-20	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		4.68461e-20	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	chitin catabolic process	GO:0006032	Biological Process	4.68461e-20	80%
Blast2go	chitinase activity	GO:0004568	Molecular Function	4.68461e-20	80%
Blast2go	cation binding	GO:0043169	Molecular Function	4.68461e-20	80%
Blast2go	lysosome	GO:0005764	Cellular Component	4.68461e-20	80%
Blast2go	extracellular region	GO:0005576	Cellular Component	4.68461e-20	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Rhodanese-like	IPR001763	-	-
Sma3	Chitinase II	IPR011583	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUQ4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 60 - 454

Fln protein: S*PWLSLNFDYEERLNRHRVFYPSLKSISS*PWLSQAWGVGLINRCELGQGLEYFFDLL*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATGAGGAGCGACTGAACAGACATAGAGTCTTTTACCCTTCTTTGAAGTCAATTTCGTCGTGACCTTGGCTGTCACAAGCATGGGGTGTTGGTCTTATCAATCGTTGTGAGCTAGGTCAAGGACTGGAATATTTCTTTGATCTGCTGTAA___TTTCTCTAAATTATCTTGTAGTAGCGGAATGAAAGTTCTCCCTAACTTATTTGAGTTCTGTCATTTGTTGTTAAATTTTACACCTAGGCAAATTAGGGGTGAGGAGCACGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAAGAGGTTCTGCAGTTTGTCTCAAATGACTTGTTTTGAGTAACTTTTGAATAATGCAGCTAAATTCAGGCCAACAAAGGAATTGATCCGTCATGAGAAGGAATAAGACAATGAGCTATTTGTAATGGTCATATTTCAAAAGAATAGCCCTACAAGGATTAAGCTAAAGCTCAGGAATTTGCGCAATGATTAATATGGAATTTACGGCTGTTTACAGGAT

Fln Alignment:

Contig12331___FDYEERLNRHRVFYPSLKSISS*PWLSQAWGVGLINRCELGQGLEY
A9NUQ4________________FDYEERLNRHRVFYPSLKSISLRLEEAQTWGVGL-SIWEIGQGLEY

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
137		71	28		1.0
139		28		71	1.0
140		28		28	1.0
142			42	57	1.0
143		28	71		1.0
145		28	42		1.0
146	42	57			1.0
148	42	28		28	1.0
149	28		71		1.0
153	71			28	1.0
154	71		28		1.0
155			71	28	1.0
156		28	71		1.0
161		28	71		1.0
162	88	11			0.923564
163	88		11		0.923564
165	88		11		0.923564
167			11	88	0.923564
168	11			88	0.923564
170		11		88	0.923564
175			11	88	0.923564
180	11			88	0.923564
181		11	88		0.923564
183	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain