SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12287

Length: 1799 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12287

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18281	7/91
SustainPine v2.0	sp_v2.0_unigene21888	82/91

Source	Descriptions	Term	Type	Identity
AutoFact	phosphotyrosine protein phosphatase-like protein [Arabidopsis thaliana] gb\|AAL38695.1\| unknown protein [Arabidopsis thaliana] gb\|AAD15447.2\| expressed protein [Arabidopsis thaliana] gb\|AAP40401.1\| unknown protein [Arabidopsis thaliana] emb\|CAE00415.1\| put	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein-tyrosine phosphatase mitochondrial mitochondrial	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Pyrophosphate-energised proton pump	IPR004131	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUV5

Fln msg: your sequence is longer than subject: 376 - 275

Fln protein: MLIKEVDLVEPGTDPDCEKLESKDRSVKITGHDVRIEKVAKRAFVGAGARVLFYPTLFYNVVRNKFESEFRWWDEVDQFVLLGAVPFPKDVQRLKELGVRGVVTLNEPYETLVPTSLYQEHDIKHLVIPTRDYLFAPSYDDIRRAVEFIHENAICGKMTYVHCKAGRGRSTTIVLCYLVEYKQMTPADAYEYVRSKRPRVLLAASQWQAVQEYEKRKHASQTRLTFPVGPSLPNRSPMMPIYISHSLYEDNVTTDMGNRGFCYDDSIVLVTSADLEGYRSIEDAGLIGNQLWKELGVTYRVRFVAARGATRASAALARLSYLWVGCQTEGKARQKDLPVASLKSLKALESCSSIADRLPSMRVDVPVCAQGVVNC*

Protein Length: 377

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGTCGTGACCTTGGCTGTCACGTCAGTGACCTTGGCATGTCACTTCATTTTATGTATTTAACAAACTTATGATATAATTAAGGGTCCGGAGATTTCCACAAGACAATTGTATAATTTGAGAATAAGATCGAAAGATTTAACATGCGAAATTGGGGTTTTCTTTTATAGAGTAATCATCTCCGGCAGTTAGGGTTAGAGAAACCAGGAATCATCGGTCACGTTCGTCTACCTGAATTGTGGATACAATTACTGGTACTGCAAGAAGAAGTAGAAGCA_-_ATGCTTATCAAGGAAGTTGATTTGGTCGAGCCAGGAACCGACCCCGATTGTGAGAAATTGGAGAGCAAGGATCGATCGGTCAAGATTACTGGACACGATGTCCGGATAGAGAAGGTTGCTAAGAGGGCGTTTGTTGGAGCAGGTGCCCGCGTCTTATTTTATCCGACTCTTTTTTATAATGTTGTTCGGAACAAGTTTGAATCGGAATTTCGATGGTGGGATGAGGTTGATCAGTTTGTTTTGCTAGGTGCTGTTCCATTCCCTAAAGATGTTCAACGCTTGAAAGAGCTTGGAGTACGAGGTGTTGTTACACTAAATGAGCCTTATGAGACCCTGGTCCCTACCTCCTTGTACCAGGAACATGACATCAAGCATCTGGTTATTCCAACAAGAGATTATCTCTTTGCCCCTTCGTATGATGATATACGTCGAGCTGTGGAATTTATTCATGAAAATGCAATTTGTGGGAAGATGACTTATGTTCATTGTAAAGCTGGGCGTGGACGCAGCACAACTATTGTACTCTGTTATTTGGTGGAGTACAAGCAAATGACACCTGCTGATGCGTACGAATATGTAAGATCAAAGAGGCCAAGAGTTTTGTTGGCTGCCTCACAGTGGCAGGCAGTACAGGAATATGAAAAACGCAAACATGCAAGCCAGACAAGATTGACTTTTCCTGTTGGGCCTTCACTTCCAAATCGGTCTCCTATGATGCCTATATACATATCTCACAGCTTATATGAAGACAATGTAACTACGGACATGGGAAATAGGGGTTTCTGTTACGATGATTCAATTGTGCTTGTTACAAGTGCTGATCTCGAGGGATATAGAAGTATTGAAGATGCTGGTCTCATTGGCAATCAATTATGGAAAGAATTGGGGGTAACTTATCGGGTGCGTTTTGTTGCTGCAAGAGGAGCGACAAGAGCTTCTGCTGCACTGGCAAGGCTATCTTACCTATGGGTTGGTTGTCAGACTGAAGGTAAAGCACGCCAAAAAGATCTGCCTGTCGCATCCTTGAAATCATTAAAAGCTCTGGAGAGCTGCTCTTCCATTGCAGACCGGCTACCTAGCATGCGTGTAGATGTTCCCGTATGTGCACAGGGTGTAGTTAATTGTTGA___GGTGTTAATGGGATACTGCGTGTTTTTATGTTTTAAATCAATCTTTGTAAACTAGAGGTTTGTAGATATTCCTGTTAGAACTTGAACATGTCCAATCAGCATTGTTGCCTACATTAGCTTGCAGGGAAAATTCTGGAATTTGCATATAACAATAAGGTTTTAAGAGGTTGTTTTTGTTTAGGAATTGACGTCACAAAGTGTCAGGTTATTTAGTCGTCAAGTGCATTTAAAGCTTAATAAGCCTATAGAAAGTATTGTAATGCCAGGAAAATAATTGTACTGCAAATGAGCTTTTGGTTGAGCAATTTTTGGCTTTCTGGAACATGGCAGTAACGCAAAATCAAATATATGGTGATTATAGTAATATATT

Fln Alignment:

Contig12287___DVRIEKVAKRAFVGAGARVLFYPTLFYNVVRNKFESEFRWWDEVDQFVLLGAVPFPKDVQRLKELGVRGVVTLNEPYETLVPTSLYQEHDIKHLVIPTRDYLFAPSYDDIRRAVEFIHENAICGKMTYVHCKAGRGRSTTIVLCYLVEYKQMTPADAYEYVRSKRPRVLLAASQWQAVQEYEKRKHASQTRLTFPVGPSLPNRSPMMPIYISHSLYEDNVTTDMGNRGFCYDDSIVLVTSADLEGYRS
A9NUV5________________DGKVEKTAKRAFVGAGARVLFYPTLLYNVVRNKLQPEFRWWDQIDQFLLLGAVPFPKDVHRLKELGVEAVVTLNEPYETLVPTSMYQDEGIKHLVIPTRDYLFAPSFDDICQAVDFIHEHVKSGKTTYVHCKAGRGRSTTIVLCYLVEHKGMGPVDAYAYVRSKRPRVLLAASQWQAVQEYTNQRRRDINKIVASTGSSRTFNCP-----VSMAISQKLVTPDGRERIFSYDDSLVFVTNADLDGYKS

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
545		28		71	1.0
548		28		71	1.0
549			28	71	1.0
554		28		71	1.0
555	71			28	1.0
556			71	28	1.0
568		28		71	1.0
654		57		42	1.0
956		85		14	0.993533
975		83		16	0.994512
976	83			16	0.994512
977	83	16			0.994512
1117		20		80	0.995493
1120			20	80	0.995493
1123	80	20			0.995493
1124	80			20	0.995493
1125			80	20	0.995493
1126			20	80	0.995493
1131	80	20			0.995493
1132	20			80	0.995493
1262	87	4		8	0.999414
1267	92		7		0.999532
1285		7		92	0.999532
1311	92		8		0.999718
1312	92			8	0.999718
1313	92	8			0.999718
1314	92		8		0.999718
1315	92			8	0.999718
1318		8		92	0.999718
1323		92	8		0.999718
1328		45	54		1.0
1382			92	7	0.999664
1389	91			8	0.999766
1391		91	8		0.999766
1392	91	8			0.999766
1395		91		8	0.999766
1396		8	91		0.999766
1397	7	11		81	1.0
1398		7	92		0.999602
1400	78	14			1.0
1401		7	92		0.999532
1402	85			3	1.0
1403		3		89	0.998606
1405	10			89	1.0
1406		10	3	85	1.0
1408		89		10	1.0
1409		91		8	1.0
1411			8	91	1.0
1412	82	8	2		0.999998
1413		5	2	91	0.995912
1416	5		91		0.995912
1418	91			8	1.0
1420	91	5			0.995912
1421		2	85	8	0.999999
1422		2	88	8	1.0
1424	3			90	0.996531
1426		6		93	0.99903
1427	93			6	0.99903

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain