SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12278

Length: 807 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12278

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13183	32/35

Source	Descriptions	Term	Type	Identity
AutoFact	SH3 domain-containing protein [Arabidopsis thaliana] gb\|AAL32439.1\|AF367774_1 SH3 domain-containing protein 2 [Arabidopsis thaliana] gb\|AAL59954.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20118.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64716.1\|	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	clathrin binding	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Src homology-3 domain	IPR001452	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
171	66		33		0.997452
174	66	33			0.997452
175	66		33		0.997452
180		33		66	0.997452
181	66			33	0.997452
182		20		80	0.995493
185	60	20	20		0.99255
186		80	20		0.995493
189	80		20		0.995493
190		20		80	0.995493
192	20			80	0.995493
193		20	60	20	0.99255
194			83	16	0.994512
198	83	16			0.994512
199	83			16	0.994512
202		16		83	0.994512
206	83	16			0.994512
207	14	85			0.993533
263		14		85	0.999981
275		8	91		0.999807
277		8		91	0.999807
279			21	78	1.0
281		91	8		0.999766
289	8		87		0.999414
291		8		91	0.999766
709	25			25	0.995533
713	33			66	0.997452
714	25		75		0.996473
718	25	75			0.996473
719	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain