SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12273

Length: 760 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12273

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3026	33/34

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trytophan synthase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9S4R8_RICCO	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Tryptophan synthase, alpha chain	IPR002028	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Tryptophan synthase, alpha chain, active site	IPR018204	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
219	90	10			0.90298
220	90		10		0.90298
222		10	90		0.90298
227	90	10			0.90298
228		10	90		0.90298
232		90	10		0.90298
233		10		90	0.90298
237	90			10	0.90298
238		10	90		0.90298
240	90	10			0.90298
241			90	10	0.90298
249	83		16		0.999991
250		83		16	0.999991
255	83	16			0.999991
256		16	83		0.999991
257	83			16	0.999991
258	83			16	0.999991
264			50	50	1.0
265		16	83		0.999991
267			83	16	0.999991
399		92	7		0.999602
402		88	11		1.0
405	88	7		3	0.998862
416	92	7			0.999602
496	63	36			1.0
622	28		71		1.0
628		71	28		1.0
724	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain