SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12182

Length: 2470 nt

UniGene Fasta

>uagpf_v2_unigene12182
CGTCGTGACCTTGGCTGTCACTCAAATAACACAGATTTCTCCACTCCCCTTTGTCTGCCATAACGCTGAACATCGATTTTTTAAAACGCCGAGGGTTTTAGGGGTCTGAGCTCCAATCCGGCAAGGATGTGGCGAAGAGTCGCCCGGAACATCTGTTCCTCGTCCACAGTCAATACGATTCGATCATATCACAATGGTCGGATTCTCTGCAGATCGGCCTCTTCAGGCACTTCGTCGGTGGGAGGTAGCGGGTCTTATACGATCGTCGATCATACCTACGACGCTGTCGTGGTGGGAGCAGGCGGTGCTGGCTTGAGAGCCGCCATCGGGCTTTCGGAGCATGGATTTAACACAGCTTGCATCACCAAGCTCTTTCCTACGCGATCGCACACCGTTGCAGCGCAGGGTGGAATTAATGCAGCTTTGGGTAATATGACTGAAGATGATTGGAGATGGCATATGTATGATACAGTAAAGGGAAGCGATTGGTTGGGTGATCAAGATTCTATCCAGTATATGTGTAGGGAGGCACCAAAAGCCGTCATTGAATTGGAGAATTATGGATTACCATTTTCACGAACTGAAGAGGGGAGGATCTATCAGCGTGCATTTGGAGGGCAAAGTCTGGATTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCTTGTGCTGCTGATCGAACTGGTCATGCTCTGCTACACACACTTTATGGGCAGGCAATGAAACATAATACCCAATTCTTTGTGGAATATTTTGCCCTGGATCTTATCATGGATGATAATGGTACCTGTCAAGGAGTGCTTGCTCTGAACATGGAGGATGGAACAATACATCGTTTTCGAGCTCTATCCACAATTCTAGCTACAGGGGGTTATGGCCGTACTTATTTCTCCGCAACTTCAGCTCACACATGCACTGGAGATGGAGGTGCTATGGTTGCACGTGCTGGACTGCCTCTGCAGGATCTTGAATTTGTCCAGTTTCACCCTACAGGAATATATGGTGCAGGTTGCCTCATCACTGAAGGATCCCGTGGTGAAGGAGGGATTTTGCGTAACAGTGAAGGTGAGAGATTTATGGAGAGATATGCTCCAACTGCAAAGGATCTGGCTTCTAGAGATGTTGTGTCCAGGTCCATGACTATGGAAATTCGTGAAGGCCGTGGTGTTGGGCCCATGAAAGATCACATATATCTCCATTTAAATCACTTGCCCCCAGAGGTCTTGAAAGAGAGGCTTCCTGGTATTTCAGAAACTGCAGCAATCTTTGCAGGGGTTGATGTTACCAAGGAACCTATACCTGTTTTACCTACTGTCCATTATAACATGGGTGGCATTCCAACAAACCATTTTGGGGAGGTTGTGAACATCATAGGCGATAACCCTGATGCCGTTATACCTGGATTATTCGCTGCTGGAGAGGCATCATGTGCATCAGTTCATGGTGCTAATCGACTTGGTGCGAACTCCCTTCTTGACATTGTAGTGTTCGGTCGAGCTTGTGCCAACAGGGTTGCTGACCTATACAGACCTGGTGAAAAACAGAAACCCTTGCCTGGCAATGCTGGAGAAAGGACAATTGCTTGGATGGATAAATTAAGGAATGCAAATGGTAGCTTGCCTACATCAAAGATACGTCTTAACATGCAGAGAGTGATGCAGAACAATGCGGCTGTCTTCCGCACTCAAGAAACTTTGGAGGAAGGATGTACCCTAATCGATGAAACTTGGAAGAGCTTTGGTGATGTCAAAGTAACTGACAGAAGTCTGATATGGAATTCAGATTTAATTGAGACAATTGAACTGGAAAACCTTCTAATAAATGCTTCAATTACAATGCACTCAGCAGAGGCTAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGACTTTACAACAAGAGACGATGCAAACTGGATGAGGCACACACTTGGGTATTGGGAAAATGGGAAGGTTCGTCTGGCATACAGGCCAGTTCATTTGAACACTTTGGATGAGGAGGTGGAGACTTTTCCTCCAAAAGCTCGTGTATACTGATACTTCAATTGCCATTTTTTTTTCTATACCATCTGAGAAGCTTCCATGTCACTCCTTACATGTCACAATGCATGTAGAGCGGTCTTGGTTAATAAATAAATTTGACAACTGTATTTGCAATAACAGCGCAAGAAGGCTTTTGTGCATTTATCATAGTTTGCAACTATGGATGGGAAGTAAATGTGTTGATACTGCTGAATATTTGTATATTCTCAATGGAGCTGCACACTGGAAGAGTTGTAGTTTCATGTGTGAGATTTTACACTGATGTTTTCCATGTTGAAAAGCTATGAACCTGTTCAATAATTGAGTTTTGGCTGCCAGTTAATGAAACAGAGCAGGCATTATTTTAAGTTCAAATTGTTCAGATGACCATGCCATTGTTTTTAGCATGTTGATTATACCACAACTTAATTGTTGTTTCGTATTCTCAGTT

Ace file of the UniGene uagpf_v2_unigene12182

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20796	77/88
SustainPine v2.0	sp_v2.0_unigene25702	2/88
SustainPine v2.0	sp_v2.0_unigene63705	3/88

Source	Descriptions	Term	Type	Identity
AutoFact	succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 [Arabidopsis thaliana] sp\|O82663.1\|DHSA1_ARATH RecName: Full=Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial; AltName: Full=Flavoprotein subunit 1 of complex II; Short=	-	-	85%
FL-Next	sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	91%
Blast2go	succinate dehydrogenase	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	94%
Blast2go	generation of precursor metabolites and energy	GO:0006091	Biological Process	94%
Blast2go	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	94%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	cell wall	GO:0005618	Cellular Component	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	Fumarate reductase/succinate dehydrogenase, FAD-binding site	IPR003952	-	-
Sma3		IPR004112	-	-
Sma3	Succinate dehydrogenase, flavoprotein subunit	IPR011281	-	-
Sma3	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	IPR014006	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6ZDY8

Fln msg:

Fln protein: MWRRVARNICSSSTVNTIRSYHNGRILCRSASSGTSSVGGSGSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEEGRIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMDDNGTCQGVLALNMEDGTIHRFRALSTILATGGYGRTYFSATSAHTCTGDGGAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVNIIGDNPDAVIPGLFAAGEASCASVHGANRLGANSLLDIVVFGRACANRVADLYRPGEKQKPLPGNAGERTIAWMDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCTLIDETWKSFGDVKVTDRSLIWNSDLIETIELENLLINASITMHSAEARKESRGAHAREDFTTRDDANWMRHTLGYWENGKVRLAYRPVHLNTLDEEVETFPPKARVY*

Protein Length: 637

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATAACACAGATTTCTCCACTCCCCTTTGTCTGCCATAACGCTGAACATCGATTTTTTAAAACGCCGAGGGTTTTAGGGGTCTGAGCTCCAATCCGGCAAGG_-_ATGTGGCGAAGAGTCGCCCGGAACATCTGTTCCTCGTCCACAGTCAATACGATTCGATCATATCACAATGGTCGGATTCTCTGCAGATCGGCCTCTTCAGGCACTTCGTCGGTGGGAGGTAGCGGGTCTTATACGATCGTCGATCATACCTACGACGCTGTCGTGGTGGGAGCAGGCGGTGCTGGCTTGAGAGCCGCCATCGGGCTTTCGGAGCATGGATTTAACACAGCTTGCATCACCAAGCTCTTTCCTACGCGATCGCACACCGTTGCAGCGCAGGGTGGAATTAATGCAGCTTTGGGTAATATGACTGAAGATGATTGGAGATGGCATATGTATGATACAGTAAAGGGAAGCGATTGGTTGGGTGATCAAGATTCTATCCAGTATATGTGTAGGGAGGCACCAAAAGCCGTCATTGAATTGGAGAATTATGGATTACCATTTTCACGAACTGAAGAGGGGAGGATCTATCAGCGTGCATTTGGAGGGCAAAGTCTGGATTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCTTGTGCTGCTGATCGAACTGGTCATGCTCTGCTACACACACTTTATGGGCAGGCAATGAAACATAATACCCAATTCTTTGTGGAATATTTTGCCCTGGATCTTATCATGGATGATAATGGTACCTGTCAAGGAGTGCTTGCTCTGAACATGGAGGATGGAACAATACATCGTTTTCGAGCTCTATCCACAATTCTAGCTACAGGGGGTTATGGCCGTACTTATTTCTCCGCAACTTCAGCTCACACATGCACTGGAGATGGAGGTGCTATGGTTGCACGTGCTGGACTGCCTCTGCAGGATCTTGAATTTGTCCAGTTTCACCCTACAGGAATATATGGTGCAGGTTGCCTCATCACTGAAGGATCCCGTGGTGAAGGAGGGATTTTGCGTAACAGTGAAGGTGAGAGATTTATGGAGAGATATGCTCCAACTGCAAAGGATCTGGCTTCTAGAGATGTTGTGTCCAGGTCCATGACTATGGAAATTCGTGAAGGCCGTGGTGTTGGGCCCATGAAAGATCACATATATCTCCATTTAAATCACTTGCCCCCAGAGGTCTTGAAAGAGAGGCTTCCTGGTATTTCAGAAACTGCAGCAATCTTTGCAGGGGTTGATGTTACCAAGGAACCTATACCTGTTTTACCTACTGTCCATTATAACATGGGTGGCATTCCAACAAACCATTTTGGGGAGGTTGTGAACATCATAGGCGATAACCCTGATGCCGTTATACCTGGATTATTCGCTGCTGGAGAGGCATCATGTGCATCAGTTCATGGTGCTAATCGACTTGGTGCGAACTCCCTTCTTGACATTGTAGTGTTCGGTCGAGCTTGTGCCAACAGGGTTGCTGACCTATACAGACCTGGTGAAAAACAGAAACCCTTGCCTGGCAATGCTGGAGAAAGGACAATTGCTTGGATGGATAAATTAAGGAATGCAAATGGTAGCTTGCCTACATCAAAGATACGTCTTAACATGCAGAGAGTGATGCAGAACAATGCGGCTGTCTTCCGCACTCAAGAAACTTTGGAGGAAGGATGTACCCTAATCGATGAAACTTGGAAGAGCTTTGGTGATGTCAAAGTAACTGACAGAAGTCTGATATGGAATTCAGATTTAATTGAGACAATTGAACTGGAAAACCTTCTAATAAATGCTTCAATTACAATGCACTCAGCAGAGGCTAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGACTTTACAACAAGAGACGATGCAAACTGGATGAGGCACACACTTGGGTATTGGGAAAATGGGAAGGTTCGTCTGGCATACAGGCCAGTTCATTTGAACACTTTGGATGAGGAGGTGGAGACTTTTCCTCCAAAAGCTCGTGTATACTGA___TACTTCAATTGCCATTTTTTTTTCTATACCATCTGAGAAGCTTCCATGTCACTCCTTACATGTCACAATGCATGTAGAGCGGTCTTGGTTAATAAATAAATTTGACAACTGTATTTGCAATAACAGCGCAAGAAGGCTTTTGTGCATTTATCATAGTTTGCAACTATGGATGGGAAGTAAATGTGTTGATACTGCTGAATATTTGTATATTCTCAATGGAGCTGCACACTGGAAGAGTTGTAGTTTCATGTGTGAGATTTTACACTGATGTTTTCCATGTTGAAAAGCTATGAACCTGTTCAATAATTGAGTTTTGGCTGCCAGTTAATGAAACAGAGCAGGCATTATTTTAAGTTCAAATTGTTCAGATGACCATGCCATTGTTTTTAGCATGTTGATTATACCACAACTTAATTGTTGTTTCGTATTCTCAGTT

Fln Alignment:

Contig12182___YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEEGRIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMDDNGTCQGVLALNMEDGTIHRFRALSTILATGGYGRTYFSATSAHTCTGDGGAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVNIIGDNPDAVIPGLFAAGEASCASVHGANRLGANSLLDIVVFGRACANRVADLYRPGEKQKPLPGNAGERTIAWMDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCTLIDETWKSFGDVKVTDRSLIWNSDXXXXXXXXXXXXXASITMHSAEARKESRGAHAREDFTTRDDANWMRHTLGYWENGKVRLAYRPVHLNTLDEEVETFPPKARVY
Q6ZDY8________________YTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSEGTCQGVIALNMEDGTLHRFRATNTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTMKGDNPDSVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAETAKPGEKQKPLQKSAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSLGYWENEKVRLAYRPVHMNTLDSEVESFPPKARVY

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
475	90			10	0.90298
476		10	90		0.90298
477	10			90	0.90298
1034	10	90			0.90298
1178	85		14		0.993533
1181	85	14			0.993533
1182	85		14		0.993533
1183	85			14	0.993533
1186		12		87	0.992554
1188	87			12	0.992554
1189		87		12	0.992554
1190	87		12		0.992554
1191			12	87	0.992554
1192	87	12			0.992554
1194	87		12		0.992554
1197	16			83	0.994512
1303		28		71	1.0
1307			28	71	1.0
1309			28	71	1.0
1316	71		28		1.0
1324	71			14	0.984337
1325		14		85	0.993533
1326	14	14		71	0.984337
1464		11	88		0.923564
1466		11		88	0.923564
1469		77		11	0.968132
1470			87	12	0.992554
1471	87	12			0.992554
1472	87	12			0.992554
1475		12		50	1.0
1476	12	75	12		0.975346
1477		87	12		0.992554
1482		12		87	0.992554
1484		12	87		0.992554
1645			14	85	0.993533
1649	85	14			0.993533
1650	85		14		0.993533
1658	85	14			0.993533
1660	85	14			0.993533
1666		14	85		0.993533
1668	85			14	0.993533
1669			85	14	0.993533
1670	85		14		0.993533
1671	85		14		0.993533
1673	71			14	0.984337
1674	85		14		0.993533
1676	14		85		0.993533
1678			87	12	0.992554
1679		12	75	12	0.975346
1680	12	87			0.992554
1683		12		87	0.992554
1688		87		12	0.992554
2068		83		16	0.994512
2069		16		83	0.994512
2091		3		88	0.999079
2092		7	92		0.999664

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain