SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12181

Length: 1418 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12181

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7250	38/45
SustainPine v2.0	sp_v2.0_unigene29266	2/45
SustainPine v2.0	sp_v2.0_unigene60929	4/45

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	auxin-induced protein pcnt115	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	DNA binding	GO:0003677	Molecular Function	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	IPR006913	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC0

Fln msg:

Fln protein: MEARIAVPRRKLGTQGMEVSALGLGCSGLSGAYGFHASEEDATSLFQHAFSNGVTFFDTADIYGRHTNEILVGKALKCLPRERIQLATKFGVYVNNEGKVAICGTADYVRKACEDSLQRLGMDYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKIKYIGLCEASVDTLQRAHAVHPITAVQYEWSLWARDIENEIIPTCRKLGIGIVPYSPLGRGFFSGKALREMNYNNTRWSNSPRFQPDNLKKNEILFDRVASLAKKHNCTPAQLALAWVLHQGDDVVPIPGTTKTGNFDDNLGSLSIIFSDRDLEEITNAVPEEAIAGPRCSEHEVPQSWKFATTPPVKKV*

Protein Length: 346

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTCAATATGTTCACTACGGAGAACTGAAGAACCAATTGGGCAATTCTGAAGTACCAATTGAGCAGTTCGTATCCGGATTCCATTCCA_-_ATGGAGGCACGCATTGCTGTCCCTCGAAGAAAGCTGGGCACCCAAGGCATGGAGGTTTCAGCATTAGGCCTAGGATGTTCAGGACTTTCAGGGGCGTATGGTTTCCATGCTTCAGAGGAAGATGCAACTTCTCTTTTCCAACATGCTTTCAGCAATGGGGTCACATTTTTTGATACAGCAGATATCTATGGTAGACATACAAATGAAATTTTAGTCGGGAAGGCTCTGAAATGCTTACCCAGAGAGAGAATTCAGCTTGCAACAAAGTTTGGAGTGTATGTAAATAATGAAGGCAAGGTTGCAATATGCGGCACTGCAGATTATGTTAGGAAAGCCTGTGAAGATAGTCTCCAACGTTTGGGGATGGATTACATCGACTTATACTACCAACACCGGGTAGACAAAAGAGTTCCAATTGAGGAAACGGTTGGAGAAATGAAGAAACTTGTTGAAGAAGGGAAAATAAAGTACATTGGACTCTGTGAGGCTAGTGTAGATACACTGCAAAGAGCTCATGCAGTGCACCCTATCACTGCAGTGCAGTATGAATGGTCCTTGTGGGCCAGGGATATTGAAAATGAAATAATTCCTACATGCAGGAAGCTAGGCATTGGAATAGTGCCTTATAGTCCACTGGGTCGTGGTTTTTTCTCTGGAAAAGCTTTGAGAGAGATGAATTACAACAACACACGATGGAGTAACAGCCCAAGGTTTCAACCAGATAACTTAAAGAAGAATGAAATTCTGTTTGATCGAGTCGCAAGTCTTGCAAAGAAGCATAACTGCACACCCGCACAGTTAGCTTTGGCATGGGTTCTCCATCAAGGGGATGATGTTGTTCCTATTCCAGGAACAACCAAAACGGGGAATTTCGATGATAATTTGGGGTCATTGAGCATAATTTTTTCTGATCGGGATCTAGAAGAGATTACAAATGCAGTTCCAGAAGAAGCAATTGCAGGTCCAAGATGCAGTGAGCATGAAGTTCCGCAATCATGGAAGTTTGCTACTACACCTCCAGTAAAGAAAGTATAA___GTTTTGAAAAAGTATGAGTTTTAAGGTAAAGAAACCATTTTAACTTCCGAATTATTATTTCAAGGGACTAGATCGTGGTTCCTATAATATGGGTTTGTGTTGTGTGTACAAGCGATGTGTGAGTTCCATGTTAGCAAGAAACTCATCTTCGTGTGTACAAGTGATACGTCAGTTCCATTTTAAGCAAGAAATTAAGCAGCTGAACCAGGAATTATACATTTCTTTGATCAACCTTTATCAACAATACATCATTAAAACATTTTAAACC

Fln Alignment:

Contig12181___IAVPRRKLGTQGMEVXXXXXXXXXXXXXXXFHASEEDATSLFQHAFSNGVTFFDTADIYGRHTNEILVGKALKCLPRERIQLATKFGVYVNNEGKVAICGTADYVRKACEDSLQRLGMDYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKIKYIGLCEASVDTLQRAHAVHPITAVQYEWSLWARDIENEIIPTCRKLGIGIVPYSPLGRGFFSGKALREMNYNNTRWSNSPRFQPDNLKKNEILFDRVASLAKKHNCTPAQLALAWVLHQGDDVVPIPGTTKTGNFDDNLGSLSIIFSDRDLEEITNAVPEEAIAGPRCSEHEVPQSWKFATTP
B8LKC0________________VVVPRRKLGTQGLEVSALGLGCSGLSGAYGTYTSEEDTIFLFQHAFNRGITFFDTADMYGHFTNEILVGKGLKHLPRDKIQLATKFGAVIKEDLSFEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETIGEMKKLVEEGKIKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRELENEIIPTCRELGIGVVPYSPLGRGFFSGKALTEINYENTRWSDHPRFQPENLAKNKILFDRISYLADKNKCTPAQLALAWIVRQGDDVVPIPGTTKIKNLDENIGSLSLKLSAQDLEEIAAAVPENEVAGSRSKYME--NTWKFSNTP

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
117		25		75	0.996473
119			75	25	0.996473
120	75	25			0.996473
122			75	25	0.996473
123		75	25		0.996473
128	75			25	0.996473
130			25	75	0.996473
137	25	75			0.996473
255	66		33		1.0
256	66			33	1.0
258	66		33		1.0
262		33		66	1.0
266	66		33		1.0
269	66			33	1.0
270	66		33		1.0
273		33	66		1.0
274	33		66		1.0
275		33	66		1.0
279	16	66			0.988813
280	83			16	0.994512
358	83			16	0.994512
361			83	16	0.994512
362	83	16			0.994512
365	83	16			0.994512
366		16		83	0.994512
368		83		16	0.994512
369	83		16		0.994512
373			16	83	0.994512
374			83	16	0.994512
377	80	20			0.995493
378		80		20	0.995493
379	75	25			0.996473
511		16	83		0.994512
514	66			16	0.988813
515		20	80		0.995493
516	80		20		0.995493
518	83	16			0.994512
519	83			16	0.994512
520	83			16	0.994512
521	83		16		0.994512
523	85			14	0.993533
526	14			85	0.993533
853		28		71	1.0
855	71			28	1.0
856	71	28			1.0
857	85		14		0.993533
859			14	85	0.993533
860	14	85			0.993533
861		14		85	0.993533
862		14	85		0.993533
865			14	85	0.993533
867	85	14			0.993533
871	85			14	0.993533
872		14	85		0.993533
873	14			85	0.993533
875			85	14	0.993533
997		12		87	0.992554
998		12	12	75	0.975346
999	12			87	0.992554
1000		12	87		0.992554
1002			87	12	0.992554
1004	12			87	0.992554
1006	87	12			0.992554
1010	87			12	0.992554
1015	87	12			0.992554
1352			75	25	0.996473
1353	75	25			0.996473
1354	75		25		0.996473
1384		33		66	0.997452
1387	66	33			0.997452
1388			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain