SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12126

Length: 1018 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12126

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9728	2/53
SustainPine v2.0	sp_v2.0_unigene9780	50/53

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MtN3_slv domain containing protein	-	-	2.0e-25	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	bidirectional sugar transporter sweet4-like	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	66%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg:

Fln protein: MAIADTIRLVVGIIGNIISIFMFLSPLPTFYKVWKWRATRGFSGFPYPMTLLNCALWVLYGMPFVHPNSILVATVNGAGVLFETLYTTLFLVFCKNKKERLKVVGLLVVISIFFAAVAAFSLALEHTHKRRTLVVGTICIIFNVFMYASPLSIMRRVIKTKSVKYMPFYLSLGCTANGFIWTAYGCIHFDINLVLPNGLGALLGVSQLILYAVYYGSTKWDEDEERETGDGVDKKADGNSQPMKILSGGGRGDNAERSGIP*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTACTTTCTGTTGCCAAAAATAGCGCTGAGCTCTTTCCTTCCTTCTTTATATTAGAGTGATTGCCCCTACTTCTGTGATTTTCCTTGGACGAAAGA_-_ATGGCCATCGCGGATACAATTCGTTTGGTTGTAGGAATAATAGGGAACATTATTTCGATTTTTATGTTCCTTTCGCCCCTGCCAACATTTTACAAAGTTTGGAAATGGAGAGCCACCCGAGGGTTTTCAGGATTTCCATACCCTATGACTCTACTGAACTGCGCATTATGGGTGCTGTATGGCATGCCCTTTGTTCACCCCAACAGCATTCTTGTGGCCACGGTAAACGGAGCAGGTGTGCTCTTTGAAACACTGTACACTACTTTGTTCCTGGTTTTCTGCAAGAACAAAAAGGAGAGGCTGAAAGTGGTGGGACTGCTGGTGGTCATCAGCATATTCTTTGCTGCTGTGGCAGCTTTCAGCTTAGCTTTGGAGCACACACACAAGAGACGAACCTTGGTTGTCGGAACGATCTGTATCATCTTCAATGTGTTCATGTATGCCTCACCTTTGTCCATCATGAGAAGGGTTATTAAAACTAAAAGTGTGAAGTACATGCCCTTCTACCTTTCCTTGGGTTGCACTGCCAATGGCTTCATCTGGACAGCTTATGGCTGCATACACTTTGACATTAATCTTGTGCTGCCCAATGGACTGGGAGCGCTGCTGGGCGTATCCCAGTTGATACTGTATGCCGTATATTACGGGAGTACTAAGTGGGATGAAGACGAAGAGAGAGAAACCGGTGATGGTGTAGATAAGAAAGCCGATGGTAATTCACAGCCTATGAAAATCCTATCTGGCGGAGGACGTGGCGATAATGCTGAGAGGAGTGGAATTCCTTGA___GGTCCAGGAGTCCATTACATTGCATGCGCCACGTCTGAACATTGATTATTCGTGGTTATTGCAGACAGACAATCCCGGCGCAAAATAAAATCGGATAGGATTTTGAGTTG

Fln Alignment:

Contig12126___VVGIIGNIISIFMFLSPLPTFYKVWKWRATRGFSGFPYPMTLLNCALWVLYGMPFVHPNSILVATVNGAGVLFETLYTTLFLVFCKNKKERLKVVGLXXXXXXXXXXXXXXXXXXEHTHKRRTLVVGTICIIFNVFMYASPLSIMRRVIKTKSVKYMPFYLSLGCTANGFIWTAYGCIHFDINLVLPNGLGALLGVSQLILYAVYYGSTKWDEDEERETGDGVDKKADGNSQPMKILSGGGRG
A9NQ39________________IFGIFGNITALTLFLAPLITFWTIIKNKSTEQFSGFPYVSTLLNCLLSAWYGLPFVSPNNLLVSTVNGTGAAIELCYVIVFLFYIRDKKYRVKIFGLLVIVLKFFALVALVSLLALHGHARK-LFCGFAAAIFSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCGTSWFIFGLLGKDPFLAVPNGVGSALGAMQLILYAVY---KDWKKKDSNTWSPPVQEEGKAGADHMNAMEMGSYG

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
11			12	87	0.992554
13		12	87		0.992554
18	12			87	0.992554
20	87	12			0.992554
21		87		12	0.992554
23		87	12		0.992554
24	62		12		1.0
25	87	12			0.992554
26			12	75	0.975346
31	12			87	0.992554
32		12		87	0.992554
35	12			87	0.992554
39	44		55		1.0
82	90	10			0.90298
86	90	10			0.90298
87			10	90	0.90298
90	10	90			0.90298
93		90		10	0.90298
95	90		10		0.90298
100	10			90	0.90298
101		10	90		0.90298
103	10		90		0.90298
149		15	84		0.999986
152		15		84	0.999986
155	84		15		0.999986
156	15		84		0.999986
157		15	84		0.999986
158	84	15			0.999986
159	84			15	0.999986
161	76		23		1.0
162	84		15		0.999986
163		15		84	0.999986
164	84			15	0.999986
166			84	15	0.999986
167		15	84		0.999986
169	84			15	0.999986
541	87	12			0.992554
542			12	87	0.992554
575		25		75	0.996473
579	25	75			0.996473
580	75		25		0.996473
582		75	25		0.996473
628			12	87	0.992554
629	87			12	0.992554
631		87	12		0.992554
633			12	87	0.992554
634	12			87	0.992554
643			16	83	0.999991
732			85	14	0.999981
738	85	14			0.999981
739	14			85	0.999981
741		85		14	0.999981
753			88	11	0.999937
754			11	88	0.999937
755	83	11	5		0.999887
760		10	85	5	0.999793
761	10			90	0.999898
762	85		15		1.0
765		10		89	0.999919
766		10	5	84	0.999846
767	84			15	1.0
768		89		10	0.999919
771		10	84	5	0.999846
772	84	5		10	0.999846
778	89	10			0.999919
832		11	88		0.999937
840			9	90	0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain