SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12112

Length: 624 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12112

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2215	26/28
SustainPine v2.0	sp_v2.0_unigene30127	1/28

Source	Descriptions	Term	Type	Identity
AutoFact	Putative inositol transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKB0_VITVI	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	probable inositol transporter 2-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	signaling	GO:0023052	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	78%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	pollen tube	GO:0090406	Biological Process	78%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
27	83		16		0.994512
29		16		83	0.994512
30	83		16		0.994512
32			16	83	0.994512
33	16			83	0.994512
34		16		83	0.994512
38			16	83	0.994512
42		83		16	0.994512
44	16			83	0.994512
45		16	83		0.994512
46			83	16	0.994512
56	85			14	0.993533
59	14			85	0.993533
79	87	12			0.992554
81	87			12	0.992554
82		12		87	0.992554
83			12	87	0.992554
85	87		12		0.992554
86	12			87	0.992554
91			12	87	0.992554
93	87	12			0.992554
94			87	12	0.992554
99		87		12	0.992554
100		12	87		0.992554
217	10		89		0.999919
255	56		43		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain