SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12020

Length: 666 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12020

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15900	24/35
SustainPine v2.0	sp_v2.0_unigene60661	8/35
SustainPine v2.0	sp_v2.0_unigene70427	1/35

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal L18p/L5e family protein [Arabidopsis thaliana] gb\|AAM63167.1\| unknown [Arabidopsis thaliana] gb\|ABD38897.1\| At5g27820 [Arabidopsis thaliana] gb\|AED93728.1\| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]	-	-	2.0e-36	65%
FL-Next	sp=50S ribosomal protein L18, chloroplastic; Guillardia theta (Cryptomonas phi). Plastid; Chloroplast.	-	-	0.0	27%
Blast2go	50s ribosomal protein l18	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L18/L5	IPR005484	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
37	10		70	20	0.999998
39		20	80		0.999996
41		80		20	0.999996
44	20			80	0.999996
45		20	80		0.999996
47	20	80			0.999996
48	20			80	0.999996
51	20	80			0.999996
53	20	80			0.999996
54	20			80	0.999996
56	80			20	0.999996
165	86	13			1.0
167		86		13	1.0
169	86		13		1.0
173		8	86	4	0.999539
180	86			13	1.0
181		13	86		1.0
183		13		86	1.0
309		84		15	0.999986
313		84		15	0.999986
363		87		12	0.999964
364		87	12		0.999964
394			83	16	0.999991
403		77		22	0.999999
439	22	77			0.999999
468		22		77	0.999999
480		71		28	1.0
483	71			28	1.0
488		71		28	1.0
489	28		71		1.0
492			28	71	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain